Rh6CG393000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000500
Physical Location & Seq
Reverse (-)
57958457 .. 57958812
356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG393000.1

Sequence Viewer

Length: 339 bp
ATGGCGTCAGAGCTTCAGAAAAGTGCCGGAGCGGATATTGCGACAGATCTGCCACCGCCGCGGGTGGAAAAGCCCAATATGGAACCTAATAGCTCTCTCAAACCCACCAAGAGGAAAGGTGGTAGTCTGTTGCTGGCGAAGAGAAGGTTAGTCAAGACCATGGCATTTCTTTCCGTTGTTCAATTCTTCAGCTCAATCTTCTGTGCCCCCGGAACCCCTGAACCCCGTTCAGCCCGTTCCACGCCACCCGAAAAAATCCACACTCCAAGATCTCCAAGCAGATTTTCCCAGAGCGGAGCCAGGATGAGAATTGCCAAAGTCCCAATGCATCGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.31

Weight (kDa)

11.43

Isoelectric Point (pI)

69.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 32, 294
AccII CGCG 1 cut(s) 61
AciI CCGC 5 cut(s) 32, 56, 59, 61, 294
AcuI CTGAAG 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 3 cut(s) 13, 93, 192
AluI AGCT 3 cut(s) 13, 93, 192
AsuC2I CCSGG 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 301
BcnI CCSGG 1 cut(s) 210
BglII AGATCT 2 cut(s) 46, 269
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 210, 301
BmiI GGNNCC 3 cut(s) 84, 214, 298
BmrFI CCNGG 2 cut(s) 210, 301
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 59, 159, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 3 cut(s) 59, 159, 208
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 27, 210
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 46, 269
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 5 cut(s) 32, 56, 59, 61, 294
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 84, 214, 298
BsrBI CCGCTC 2 cut(s) 32, 294
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 59, 159, 208
BssMI GATC 2 cut(s) 46, 269
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 135
BstDSI CCRYGG 2 cut(s) 59, 159
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 2 cut(s) 49, 272
BstMBI GATC 2 cut(s) 46, 269
BstMWI GCNNNNNNNGC 2 cut(s) 38, 58
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 208, 299
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 46, 269
BstYI RGATCY 2 cut(s) 46, 269
BtgI CCRYGG 2 cut(s) 59, 159
BtgZI GCGATG 1 cut(s) 314
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 135
Cfr42I CCGCGG 1 cut(s) 62
CviAII CATG 1 cut(s) 160
CviJI RGCY 6 cut(s) 13, 73, 93, 192, 233, 299
CviKI_1 RGCY 6 cut(s) 13, 73, 93, 192, 233, 299
DpnI GATC 2 cut(s) 48, 271
DpnII GATC 2 cut(s) 46, 269
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 80, 161
FaqI GGGAC 1 cut(s) 305
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 2 cut(s) 27, 210
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 163
HpaII CCGG 2 cut(s) 27, 210
Hpy188I TCNGA 2 cut(s) 10, 18
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 58
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 163
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 46, 269
LmnI GCTCC 2 cut(s) 29, 296
LpnPI CCDG 7 cut(s) 40, 119, 223, 231, 286, 302, 313
MalI GATC 2 cut(s) 48, 271
MbiI CCGCTC 2 cut(s) 32, 294
MboI GATC 2 cut(s) 46, 269
MboII GAAGA 3 cut(s) 151, 178, 190
MflI RGATCY 2 cut(s) 46, 269
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 182, 309
MnlI CCTC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 2 cut(s) 27, 210
MspR9I CCNGG 2 cut(s) 210, 301
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 38, 58
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 159
NdeII GATC 2 cut(s) 46, 269
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 3 cut(s) 84, 214, 298
NsiI ATGCAT 1 cut(s) 330
PkrI GCNGC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 84, 214, 298
PsuI RGATCY 2 cut(s) 46, 269
SacII CCGCGG 1 cut(s) 62
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 46, 269
ScrFI CCNGG 2 cut(s) 210, 301
SduI GDGCHC 1 cut(s) 208
SetI ASST 6 cut(s) 15, 88, 95, 121, 149, 194
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
Sse9I AATT 2 cut(s) 182, 309
SsiI CCGC 5 cut(s) 32, 56, 59, 61, 294
StyD4I CCNGG 2 cut(s) 208, 299
StyI CCWWGG 1 cut(s) 159
TasI AATT 2 cut(s) 182, 309
TauI GCSGC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.