Rh6CG393500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000500
Physical Location & Seq
Forward (+)
58108897 .. 58109228
332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG393500.1

Sequence Viewer

Length: 270 bp
ATGGCGGAGAAGGCAATGAGGAACAACTCATGCAGTAACTATAAGGGGGTTGCTGTATCGGGCTCTAAACCAATGGTTGCAACTGCTAGTGTCATACCAGCAAAAAGGAGGTCAGTGAAACGAATGATATTCGATGACATCGTGGAATCTGTAGCCACTTTCCTTCGTCGCTGTGCATTGTCTTCTTCATCAAATGCCAAGAAGAGTACCGGCGGTAGACAATTAATAGTTCAGAACTGGATCATTGTAGAATCAATTATATTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.67

Weight (kDa)

10.44

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 217
AciI CCGC 2 cut(s) 5, 213
AclWI GGATC 1 cut(s) 248
AfaI GTAC 1 cut(s) 208
AlwI GGATC 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AseI ATTAAT 1 cut(s) 224
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 174
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 5, 213
BspPI GGATC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 209
BssMI GATC 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 197
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 209
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 30, 267
CviJI RGCY 2 cut(s) 63, 155
CviKI_1 RGCY 2 cut(s) 63, 155
CviQI GTAC 1 cut(s) 207
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 2 cut(s) 33, 270
FaiI YATR 5 cut(s) 31, 42, 95, 260, 268
FatI CATG 2 cut(s) 29, 266
FblI GTMKAC 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 1 cut(s) 87
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 33, 270
HinfI GANTC 2 cut(s) 146, 251
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 218
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 4, 173
HpyCH4V TGCA 3 cut(s) 33, 80, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 33, 270
Kzo9I GATC 1 cut(s) 240
LpnPI CCDG 3 cut(s) 111, 223, 223
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 3 cut(s) 174, 177, 214
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 221, 255
MnlI CCTC 2 cut(s) 12, 102
MseI TTAA 1 cut(s) 224
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 240
NlaIII CATG 2 cut(s) 33, 270
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 146, 251
PshBI ATTAAT 1 cut(s) 224
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 224
Sau3AI GATC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 65
SetI ASST 1 cut(s) 113
SfcI CTRYAG 1 cut(s) 150
SgeI CNNG 8 cut(s) 42, 72, 99, 110, 154, 211, 222, 250
Sse9I AATT 2 cut(s) 221, 255
SsiI CCGC 2 cut(s) 5, 213
SspMI CTAG 1 cut(s) 87
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 221, 255
TfiI GAWTC 2 cut(s) 146, 251
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 120
VspI ATTAAT 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.