Rorug06G0268600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000500
Physical Location & Seq
Reverse (-)
41544912 .. 41546426
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0268600.1

Sequence Viewer

Length: 675 bp
ATGGGTATTTCCAGGGACTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGTCAGGCAGCAAATACCAAGATCTCGAGCAACAAAACTGTAAGGAGAATTCGTGTTAGAGGTGGCAATGTGAAGTGGAGGGCCCTGAGATTGGATACTGGGAACTTTTCTTGGGGTAGTGAGGCTGTTACTCGCAAGACTCGTATTCTTGATGTCGTTTACAATGCCTCAAACAACGAACTTGTTAGGACACAGACTCTTGTGAAGAGTGCAATTGTTCAGGTGGATGCTGCTCCTTTTAGGCAATGGTATCTACAGCACTACAATGTTGATATCGGGAGGAAGAAAAAGACAGCTGCAAAAAAGGATGCCAAGGATGCTGCTACAGAGGAGGCAGATGGCACCACAGAAGAAACCAAAAAGAGCAGCAATCTCCTGAGGAAGCTTGAGAAGCGCCAGAAAGATCGTACTCTTGATTCCCACATCGAAGAGCAGTTCAGTGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCAGGCCAATGTGGAAGATCTGATGGGTACATTTTGGAGGGGAAAGAATTAGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.36

Weight (kDa)

10.43

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 5 - 200 3.1e-53 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AccII CGCG 1 cut(s) 36
AciI CCGC 1 cut(s) 562
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 2 cut(s) 499, 593
AfiI CCNNNNNNNGG 1 cut(s) 181
AjnI CCWGG 2 cut(s) 11, 565
AluBI AGCT 5 cut(s) 59, 85, 386, 475, 659
AluI AGCT 5 cut(s) 59, 85, 386, 475, 659
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 2 cut(s) 171, 568
ApaI GGGCCC 1 cut(s) 175
ApeKI GCWGC 8 cut(s) 98, 320, 386, 410, 456, 656, 665, 668
ApoI RAATTY 1 cut(s) 138
AscI GGCGCGCC 1 cut(s) 34
AspLEI GCGC 3 cut(s) 36, 38, 486
AspS9I GGNCC 2 cut(s) 171, 172
AvaI CYCGRG 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 175
BbvI GCAGC 8 cut(s) 110, 307, 373, 397, 468, 652, 655, 668
BccI CCATC 2 cut(s) 422, 581
BciT130I CCWGG 2 cut(s) 13, 567
BciVI GTATCC 1 cut(s) 178
BfmI CTRYAG 2 cut(s) 344, 414
BfoI RGCGCY 1 cut(s) 487
BfuI GTATCC 1 cut(s) 178
BglII AGATCT 2 cut(s) 111, 581
BisI GCNGC 8 cut(s) 99, 321, 387, 411, 457, 657, 666, 669
BlsI GCNGC 8 cut(s) 100, 322, 388, 412, 458, 658, 667, 670
Bme1390I CCNGG 2 cut(s) 13, 567
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 171, 172
BmiI GGNNCC 2 cut(s) 173, 433
BmrFI CCNGG 2 cut(s) 13, 567
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 3 cut(s) 307, 388, 397
BmuI ACTGGG 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 12, 402, 565
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 46, 193
Bse21I CCTNAGG 1 cut(s) 467
Bse3DI GCAATG 2 cut(s) 163, 341
BseBI CCWGG 2 cut(s) 13, 567
BseDI CCNNGG 3 cut(s) 12, 402, 565
BseGI GGATG 3 cut(s) 322, 403, 412
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 2 cut(s) 163, 341
BseMII CTCAG 2 cut(s) 167, 458
BseNI ACTGG 2 cut(s) 46, 193
BsePI GCGCGC 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 8 cut(s) 110, 307, 373, 397, 468, 652, 655, 668
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 173, 570
BshNI GGYRCC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 173, 570
BsoBI CYCGRG 1 cut(s) 115
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 111, 493, 581
BspACI CCGC 1 cut(s) 562
BspANI GGCC 2 cut(s) 173, 570
BspCNI CTCAG 2 cut(s) 168, 459
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 173, 433
BspQI GCTCTTC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 431
BsrDI GCAATG 2 cut(s) 163, 341
BsrI ACTGG 2 cut(s) 46, 193
BssECI CCNNGG 3 cut(s) 12, 402, 565
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 3 cut(s) 111, 493, 581
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 13, 567
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 290, 513
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 36, 550
BstDEI CTNAG 2 cut(s) 176, 467
BstF5I GGATG 3 cut(s) 322, 403, 412
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 3 cut(s) 36, 38, 486
BstKTI GATC 3 cut(s) 114, 496, 584
BstMBI GATC 3 cut(s) 111, 493, 581
BstMWI GCNNNNNNNGC 5 cut(s) 31, 407, 481, 662, 665
BstNI CCWGG 2 cut(s) 13, 567
BstSCI CCNGG 2 cut(s) 11, 565
BstSFI CTRYAG 2 cut(s) 344, 414
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 8 cut(s) 110, 307, 373, 397, 468, 652, 655, 668
BstX2I RGATCY 2 cut(s) 111, 581
BstYI RGATCY 2 cut(s) 111, 581
Bsu36I CCTNAGG 1 cut(s) 467
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 173, 570
BtsCI GGATG 3 cut(s) 322, 403, 412
BtsIMutI CAGTG 2 cut(s) 39, 535
Cac8I GCNNGC 2 cut(s) 36, 550
CfoI GCGC 3 cut(s) 36, 38, 486
Cfr13I GGNCC 2 cut(s) 171, 172
Csp6I GTAC 2 cut(s) 498, 592
CviAII CATG 1 cut(s) 625
CviJI RGCY 9 cut(s) 59, 85, 173, 215, 386, 475, 548, 570, 659
CviKI_1 RGCY 9 cut(s) 59, 85, 173, 215, 386, 475, 548, 570, 659
CviQI GTAC 2 cut(s) 498, 592
DdeI CTNAG 2 cut(s) 176, 467
DpnI GATC 3 cut(s) 113, 495, 583
DpnII GATC 3 cut(s) 111, 493, 581
Eam1104I CTCTTC 2 cut(s) 290, 513
EarI CTCTTC 2 cut(s) 290, 513
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 175
Eco32I GATATC 1 cut(s) 364
Eco81I CCTNAGG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 171, 172
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 11, 565
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 1 cut(s) 628
FaiI YATR 4 cut(s) 23, 81, 626, 673
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 624
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 8 cut(s) 99, 321, 387, 411, 457, 657, 666, 669
FokI GGATG 3 cut(s) 329, 410, 419
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 8 cut(s) 99, 321, 387, 411, 457, 657, 666, 669
GlaI GCGC 3 cut(s) 35, 37, 485
GluI GCNGC 8 cut(s) 99, 321, 387, 411, 457, 657, 666, 669
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 2 cut(s) 173, 570
HhaI GCGC 3 cut(s) 36, 38, 486
Hin1II CATG 1 cut(s) 628
Hin6I GCGC 3 cut(s) 34, 36, 484
HinP1I GCGC 3 cut(s) 34, 36, 484
HindIII AAGCTT 2 cut(s) 57, 473
HinfI GANTC 4 cut(s) 17, 229, 286, 506
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 586
Hpy188III TCNNGA 6 cut(s) 115, 239, 367, 466, 503, 637
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 5 cut(s) 25, 302, 389, 552, 671
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 407, 481, 662, 665
HpyF3I CTNAG 2 cut(s) 176, 467
Hsp92II CATG 1 cut(s) 628
HspAI GCGC 3 cut(s) 34, 36, 484
Kzo9I GATC 3 cut(s) 111, 493, 581
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 8 cut(s) 110, 307, 373, 397, 468, 652, 655, 668
LweI GCATC 3 cut(s) 307, 388, 397
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 113, 495, 583
MboI GATC 3 cut(s) 111, 493, 581
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 2 cut(s) 111, 581
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 3 cut(s) 138, 303, 611
MlyI GAGTC 3 cut(s) 11, 223, 280
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 386, 659
MspR9I CCNGG 2 cut(s) 13, 567
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 2 cut(s) 13, 567
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 5 cut(s) 31, 407, 481, 662, 665
NdeII GATC 3 cut(s) 111, 493, 581
NlaIII CATG 1 cut(s) 628
NlaIV GGNNCC 2 cut(s) 173, 433
PaeR7I CTCGAG 1 cut(s) 115
PalAI GGCGCGCC 1 cut(s) 34
PauI GCGCGC 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 8 cut(s) 100, 322, 388, 412, 458, 658, 667, 670
PleI GAGTC 3 cut(s) 11, 223, 280
PpsI GAGTC 3 cut(s) 11, 223, 280
Psp6I CCWGG 2 cut(s) 11, 565
PspGI CCWGG 2 cut(s) 11, 565
PspN4I GGNNCC 2 cut(s) 173, 433
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 2 cut(s) 171, 172
PsuI RGATCY 2 cut(s) 111, 581
PteI GCGCGC 1 cut(s) 34
PvuII CAGCTG 2 cut(s) 386, 659
RsaI GTAC 2 cut(s) 499, 593
RsaNI GTAC 2 cut(s) 498, 592
RseI CAYNNNNRTG 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 513
SatI GCNGC 8 cut(s) 99, 321, 387, 411, 457, 657, 666, 669
Sau3AI GATC 3 cut(s) 111, 493, 581
Sau96I GGNCC 2 cut(s) 171, 172
SchI GAGTC 3 cut(s) 11, 223, 280
ScrFI CCNGG 2 cut(s) 13, 567
SduI GDGCHC 1 cut(s) 175
SetI ASST 8 cut(s) 61, 87, 154, 315, 388, 477, 542, 661
SfaNI GCATC 3 cut(s) 307, 388, 397
SfcI CTRYAG 2 cut(s) 344, 414
Sfr274I CTCGAG 1 cut(s) 115
SgsI GGCGCGCC 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 115, 476
SmoI CTYRAG 2 cut(s) 115, 476
Sse9I AATT 3 cut(s) 138, 303, 611
SsiI CCGC 1 cut(s) 562
StyD4I CCNGG 2 cut(s) 11, 565
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 116, 516
TasI AATT 3 cut(s) 138, 303, 611
TfiI GAWTC 1 cut(s) 506
TscAI CASTG 2 cut(s) 46, 535
TseI GCWGC 8 cut(s) 98, 320, 386, 410, 456, 656, 665, 668
TspDTI ATGAA 1 cut(s) 641
TspRI CASTG 2 cut(s) 46, 535
XapI RAATTY 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.