FvH4_2g28170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22181494 .. 22182125
632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28170.t1

Sequence Viewer

Length: 522 bp
ATGGTGTTGAAGCAGCTTCAGAACTATGCAGGTGCGGCAATTCTCGGGTCGTCCGAGACAGACCCAGCAAAGCCGGCGGGCAAGCTCGAGTCGACGGAGGCCAGTTGGTGCAAGCCCAAGAAGGGCAGTGTTTTTCCGGTGAAAAGGAGGTTGGTAAAGACCATGATGTTCAATTCCATCGTGAAATTCATTGCCTCTGTTTTCTCTTCCCCTGAACGAATACCCATTCCCATCATCTCTCTTTCACCACCCAAAACCCCAAATGCCAAAAAATGCAACCACACTCAAATATTCCCATATCCAAACCCAGACCGTGATGGCAGTTTCGTAATGCATCGTCGACTCTTCATGATGTTCCCTTTTCACCATCCGCTTTTTCGATCCCGACCTCACCTGAATTCCAAACCGGCCGGCAACGAAAAGGCCTTGGGAAGACTGGAAAGCTCACTGGTTTCGACGACGTCGGAATCTAGTCCGAGCTGTGCATCCGGCGTCAGCATTCCGGCAGAGGTGGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.02

Weight (kDa)

9.97

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
AatII GACGTC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 20
AccI GTMKAC 2 cut(s) 92, 340
AciI CCGC 3 cut(s) 35, 77, 371
AclWI GGATC 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 185, 397
AcyI GRCGYC 2 cut(s) 461, 492
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 10, 172
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 4 cut(s) 16, 85, 444, 480
AluI AGCT 4 cut(s) 16, 85, 444, 480
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 375
Ama87I CYCGRG 2 cut(s) 44, 86
AoxI GGCC 3 cut(s) 99, 408, 423
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 185, 397
AsuHPI GGTGA 4 cut(s) 151, 237, 356, 383
AvaI CYCGRG 2 cut(s) 44, 86
BbsI GAAGAC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 25
BccI CCATC 4 cut(s) 185, 239, 311, 375
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 2 cut(s) 14, 36
BlsI GCNGC 2 cut(s) 15, 37
BmeT110I CYCGRG 2 cut(s) 44, 86
BmsI GCATC 2 cut(s) 343, 494
BpiI GAAGAC 1 cut(s) 439
BsaHI GRCGYC 2 cut(s) 461, 492
BsaJI CCNNGG 1 cut(s) 426
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 3 cut(s) 73, 406, 410
Bse1I ACTGG 3 cut(s) 102, 441, 453
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 367, 485
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 3 cut(s) 102, 441, 453
BseX3I CGGCCG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 3 cut(s) 101, 410, 425
BsiEI CGRYCG 1 cut(s) 411
BsiHKCI CYCGRG 2 cut(s) 44, 86
BsiSI CCGG 6 cut(s) 74, 137, 407, 411, 489, 503
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 3 cut(s) 101, 410, 425
BsoBI CYCGRG 2 cut(s) 44, 86
Bsp143I GATC 1 cut(s) 380
BspACI CCGC 3 cut(s) 35, 77, 371
BspANI GGCC 3 cut(s) 101, 410, 425
BspHI TCATGA 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 3 cut(s) 73, 406, 410
BsrI ACTGG 3 cut(s) 102, 441, 453
BssAI RCCGGY 3 cut(s) 73, 406, 410
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 1 cut(s) 380
BssNI GRCGYC 2 cut(s) 461, 492
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 211, 350
BstACI GRCGYC 2 cut(s) 461, 492
BstC8I GCNNGC 5 cut(s) 75, 79, 83, 113, 412
BstF5I GGATG 2 cut(s) 367, 485
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 380
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 2 cut(s) 35, 74
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 439
BstZI CGGCCG 1 cut(s) 408
BsuRI GGCC 3 cut(s) 101, 410, 425
BtsCI GGATG 2 cut(s) 367, 485
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 446
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 5 cut(s) 75, 79, 83, 113, 412
CciI TCATGA 1 cut(s) 348
Cfr10I RCCGGY 3 cut(s) 73, 406, 410
CseI GACGC 1 cut(s) 481
CviAII CATG 2 cut(s) 163, 349
CviJI RGCY 9 cut(s) 16, 73, 85, 101, 115, 410, 425, 444, 480
CviKI_1 RGCY 9 cut(s) 16, 73, 85, 101, 115, 410, 425, 444, 480
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 408
EagI CGGCCG 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 211, 350
EarI CTCTTC 2 cut(s) 211, 350
EclXI CGGCCG 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 425
Eco52I CGGCCG 1 cut(s) 408
Eco88I CYCGRG 2 cut(s) 44, 86
EcoRI GAATTC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 166, 352
FaiI YATR 4 cut(s) 27, 164, 298, 350
FatI CATG 2 cut(s) 162, 348
FauI CCCGC 1 cut(s) 70
FblI GTMKAC 2 cut(s) 92, 340
Fnu4HI GCNGC 2 cut(s) 14, 36
FokI GGATG 2 cut(s) 354, 472
Fsp4HI GCNGC 2 cut(s) 14, 36
FspBI CTAG 1 cut(s) 471
GluI GCNGC 2 cut(s) 14, 36
GsaI CCCAGC 1 cut(s) 68
HaeIII GGCC 3 cut(s) 101, 410, 425
HapII CCGG 6 cut(s) 74, 137, 407, 411, 489, 503
HgaI GACGC 1 cut(s) 481
Hin1I GRCGYC 2 cut(s) 461, 492
Hin1II CATG 2 cut(s) 166, 352
HincII GTYRAC 2 cut(s) 93, 341
HindII GTYRAC 2 cut(s) 93, 341
HinfI GANTC 3 cut(s) 89, 342, 467
HpaII CCGG 6 cut(s) 74, 137, 407, 411, 489, 503
HphI GGTGA 4 cut(s) 151, 237, 356, 383
Hpy166II GTNNAC 2 cut(s) 93, 341
Hpy188I TCNGA 4 cut(s) 21, 55, 466, 477
Hpy188III TCNNGA 3 cut(s) 181, 349, 384
Hpy8I GTNNAC 2 cut(s) 93, 341
Hpy99I CGWCG 5 cut(s) 97, 342, 460, 463, 466
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 5 cut(s) 29, 111, 276, 334, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 74
HpySE526I ACGT 1 cut(s) 461
Hsp92I GRCGYC 2 cut(s) 461, 492
Hsp92II CATG 2 cut(s) 166, 352
KroI GCCGGC 2 cut(s) 73, 410
KroNI GCCGGC 2 cut(s) 75, 412
Kzo9I GATC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 343, 494
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 461
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 3 cut(s) 198, 337, 444
MluCI AATT 4 cut(s) 39, 172, 185, 397
MlyI GAGTC 2 cut(s) 98, 336
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 5 cut(s) 91, 141, 205, 399, 502
Mph1103I ATGCAT 1 cut(s) 336
MroNI GCCGGC 2 cut(s) 73, 410
MspI CCGG 6 cut(s) 74, 137, 407, 411, 489, 503
Mva1269I GAATGC 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 35, 74
NaeI GCCGGC 2 cut(s) 75, 412
NdeII GATC 1 cut(s) 380
NgoMIV GCCGGC 2 cut(s) 73, 410
NlaIII CATG 2 cut(s) 166, 352
NsiI ATGCAT 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 86
PagI TCATGA 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 498
PdiI GCCGGC 2 cut(s) 75, 412
PfeI GAWTC 1 cut(s) 467
PflFI GACNNNGTC 1 cut(s) 460
PkrI GCNGC 2 cut(s) 15, 37
PleI GAGTC 2 cut(s) 97, 336
PpsI GAGTC 2 cut(s) 97, 336
PspFI CCCAGC 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 460
SalI GTCGAC 2 cut(s) 91, 339
SatI GCNGC 2 cut(s) 14, 36
Sau3AI GATC 1 cut(s) 380
SchI GAGTC 2 cut(s) 98, 336
SfaNI GCATC 2 cut(s) 343, 494
Sfr274I CTCGAG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 39, 172, 185, 397
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 3 cut(s) 35, 77, 371
SspI AATATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 471
StuI AGGCCT 1 cut(s) 425
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 464
TaqI TCGA 5 cut(s) 87, 92, 340, 379, 455
TasI AATT 4 cut(s) 39, 172, 185, 397
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 467
TscAI CASTG 2 cut(s) 133, 453
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 178, 337
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 2 cut(s) 133, 453
Tth111I GACNNNGTC 1 cut(s) 460
XapI RAATTY 2 cut(s) 185, 397
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 92, 340
XspI CTAG 1 cut(s) 471
ZraI GACGTC 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.