FvH4_2g28160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22174684 .. 22179819
5136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28160.t1

Sequence Viewer

Length: 768 bp
ATGGCGTCGAAGCTTCGGAACCCTACAGGTGCGGAGGTTGTCTCGGCGGAGACAAACCCACAGGAGGTGGTGAAGCCCAAGACAGCGAAACAGGTGGTAGACAAGCTCTTGATCAAGACGGAGGCTTATTGTTTCAAGCCCAAGAAGGGCTCTGTTTTCCCGGCAAAAAGAAGGCTTGTGAAGACCATGGTGTTCCAGTCCATTCTGAAATTCGTGGCCTCCGGTTTCTGTTCCATTCGAAAAGCCAACCCCATCTCTCTTTCACGCCCCAACATCCCAAATGCCAACAAAAGCAACCAGAAACAAGTAGTCCCCAACCTTGATGAACAGTTGGCCGTCCACCAAGAATCGACGTCGGATTCCGTCGAATCTTCACCTCCGACCGTCGCTATTCCAGCAGTTGCCGGGAAAAGGCCGGTGAGGAGGGGAGAAGATGAGCAGGATATCTCGCCGGTTGGCAGAGTCAAGCTCGGCTTCGTCGGAATCTTACGCGGCCGCTCCAAAGCGGTTTATCGTCGTCGTTGTCGAGGTTGTCATCGACAACTTTGGCGAATGAGGAGCAACCAAATCATGAAGAGAGACGACCGAACTGAGGCGTCAATGTGGTACAACCATTGGAGCACCTCCGATCTCTCCGCCAAGAAGGCCGCCTCTCAAGAAATACAGACGGCGATTCGCGCCAAGCCTCTAGGTCGTCACCGGCGAGCTCGTGTGGCCTGCAATGACAACAATTTGGCCACCATGGTGAATCGGATATATCGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.72

Weight (kDa)

10.8

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 99
AccII CGCG 2 cut(s) 492, 678
AciI CCGC 7 cut(s) 32, 47, 492, 496, 506, 636, 648
AcoI YGGCCR 3 cut(s) 333, 493, 735
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 3 cut(s) 5, 353, 596
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 4 cut(s) 64, 146, 411, 592
AgsI TTSAA 1 cut(s) 136
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 4 cut(s) 13, 106, 469, 707
AluI AGCT 4 cut(s) 13, 106, 469, 707
Alw21I GWGCWC 2 cut(s) 623, 709
Alw26I GTCTC 3 cut(s) 44, 46, 573
AoxI GGCC 7 cut(s) 216, 333, 413, 493, 645, 714, 735
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 680
AsuC2I CCSGG 2 cut(s) 161, 406
AsuHPI GGTGA 5 cut(s) 82, 366, 430, 689, 757
AsuII TTCGAA 1 cut(s) 238
BalI TGGCCA 1 cut(s) 737
BanII GRGCYC 2 cut(s) 152, 709
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 623, 709
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 320, 684
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 2 cut(s) 161, 406
BcoDI GTCTC 3 cut(s) 44, 46, 573
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 3 cut(s) 493, 496, 648
BlsI GCNGC 3 cut(s) 494, 497, 649
Bme1390I CCNGG 2 cut(s) 161, 406
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 161, 406
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 4 cut(s) 26, 58, 453, 485
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 2 cut(s) 161, 406
BsaHI GRCGYC 3 cut(s) 5, 353, 596
BsaJI CCNNGG 2 cut(s) 186, 741
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 146, 411, 592
Bse118I RCCGGY 3 cut(s) 415, 451, 699
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 727
BseDI CCNNGG 2 cut(s) 186, 741
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 4 cut(s) 64, 146, 411, 592
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 2 cut(s) 436, 571
BseX3I CGGCCG 1 cut(s) 493
Bsh1236I CGCG 2 cut(s) 492, 678
Bsh1285I CGRYCG 3 cut(s) 384, 496, 586
BshFI GGCC 7 cut(s) 218, 335, 415, 495, 647, 716, 737
BsiEI CGRYCG 3 cut(s) 384, 496, 586
BsiHKAI GWGCWC 2 cut(s) 623, 709
BsiSI CCGG 6 cut(s) 161, 222, 405, 416, 452, 700
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 4 cut(s) 64, 146, 411, 592
BsmAI GTCTC 3 cut(s) 44, 46, 573
BsmBI CGTCTC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 7 cut(s) 218, 335, 415, 495, 647, 716, 737
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 3 cut(s) 152, 623, 709
Bsp143I GATC 2 cut(s) 111, 628
Bsp19I CCATGG 2 cut(s) 186, 741
BspACI CCGC 7 cut(s) 32, 47, 492, 496, 506, 636, 648
BspANI GGCC 7 cut(s) 218, 335, 415, 495, 647, 716, 737
BspCNI CTCAG 1 cut(s) 583
BspFNI CGCG 2 cut(s) 492, 678
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 3 cut(s) 415, 451, 699
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 3 cut(s) 415, 451, 699
BssECI CCNNGG 2 cut(s) 186, 741
BssMI GATC 2 cut(s) 111, 628
BssNI GRCGYC 3 cut(s) 5, 353, 596
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 2 cut(s) 186, 741
Bst2BI CACGAG 1 cut(s) 708
Bst4CI ACNGT 2 cut(s) 330, 385
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 3 cut(s) 5, 353, 596
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 705, 718
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 2 cut(s) 186, 741
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 2 cut(s) 492, 678
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 2 cut(s) 114, 631
BstMAI GTCTC 3 cut(s) 44, 46, 573
BstMBI GATC 2 cut(s) 111, 628
BstMCI CGRYCG 3 cut(s) 384, 496, 586
BstMWI GCNNNNNNNGC 4 cut(s) 395, 644, 677, 713
BstSCI CCNGG 2 cut(s) 159, 404
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 2 cut(s) 492, 678
BstV2I GAAGAC 1 cut(s) 188
BstZI CGGCCG 1 cut(s) 493
BsuRI GGCC 7 cut(s) 218, 335, 415, 495, 647, 716, 737
BtgI CCRYGG 2 cut(s) 186, 741
BtsCI GGATG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 705, 718
CciI TCATGA 1 cut(s) 570
CciNI GCGGCCGC 1 cut(s) 493
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 3 cut(s) 415, 451, 699
CseI GACGC 1 cut(s) 585
Csp6I GTAC 1 cut(s) 607
CviAII CATG 3 cut(s) 187, 571, 742
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 1 cut(s) 591
DpnI GATC 2 cut(s) 113, 630
DpnII GATC 2 cut(s) 111, 628
EaeI YGGCCR 3 cut(s) 333, 493, 735
EagI CGGCCG 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
EciI GGCGGA 2 cut(s) 62, 625
Ecl136II GAGCTC 1 cut(s) 707
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 186, 741
Eco24I GRGCYC 2 cut(s) 152, 709
Eco32I GATATC 1 cut(s) 445
Eco52I CGGCCG 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 707
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 186, 741
EcoT38I GRGCYC 2 cut(s) 152, 709
ErhI CCWWGG 2 cut(s) 186, 741
Esp3I CGTCTC 1 cut(s) 573
FaeI CATG 3 cut(s) 190, 574, 745
FaiI YATR 4 cut(s) 188, 572, 743, 757
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 1 cut(s) 296
FatI CATG 3 cut(s) 186, 570, 741
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 493, 496, 648
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 2 cut(s) 152, 709
Fsp4HI GCNGC 3 cut(s) 493, 496, 648
FspBI CTAG 1 cut(s) 689
GlaI GCGC 1 cut(s) 679
GluI GCNGC 3 cut(s) 493, 496, 648
HaeIII GGCC 7 cut(s) 218, 335, 415, 495, 647, 716, 737
HapII CCGG 6 cut(s) 161, 222, 405, 416, 452, 700
HgaI GACGC 1 cut(s) 585
HhaI GCGC 1 cut(s) 680
Hin1I GRCGYC 3 cut(s) 5, 353, 596
Hin1II CATG 3 cut(s) 190, 574, 745
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 7 cut(s) 347, 359, 368, 462, 483, 673, 748
HpaII CCGG 6 cut(s) 161, 222, 405, 416, 452, 700
HphI GGTGA 5 cut(s) 82, 366, 430, 689, 757
Hpy166II GTNNAC 2 cut(s) 100, 340
Hpy188I TCNGA 8 cut(s) 18, 207, 358, 381, 482, 628, 753, 762
Hpy188III TCNNGA 4 cut(s) 109, 115, 571, 656
Hpy8I GTNNAC 2 cut(s) 100, 340
Hpy99I CGWCG 8 cut(s) 10, 355, 358, 368, 389, 482, 519, 522
HpyAV CCTTC 3 cut(s) 139, 165, 637
HpyCH4III ACNGT 2 cut(s) 330, 385
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 720
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 644, 677, 713
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 1 cut(s) 353
Hsp92I GRCGYC 3 cut(s) 5, 353, 596
Hsp92II CATG 3 cut(s) 190, 574, 745
HspAI GCGC 1 cut(s) 678
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 2 cut(s) 111, 628
LmnI GCTCC 3 cut(s) 503, 558, 618
MaeI CTAG 1 cut(s) 689
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 695
MalI GATC 2 cut(s) 113, 630
MbiI CCGCTC 1 cut(s) 498
MboI GATC 2 cut(s) 111, 628
MboII GAAGA 4 cut(s) 193, 363, 443, 586
MhlI GDGCHC 3 cut(s) 152, 623, 709
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 2 cut(s) 209, 730
MluNI TGGCCA 1 cut(s) 737
MlyI GAGTC 1 cut(s) 471
MmeI TCCRAC 3 cut(s) 336, 404, 460
Mox20I TGGCCA 1 cut(s) 737
MscI TGGCCA 1 cut(s) 737
MslI CAYNNNNRTG 1 cut(s) 743
Msp20I TGGCCA 1 cut(s) 737
MspI CCGG 6 cut(s) 161, 222, 405, 416, 452, 700
MspR9I CCNGG 2 cut(s) 161, 406
MvnI CGCG 2 cut(s) 492, 678
MwoI GCNNNNNNNGC 4 cut(s) 395, 644, 677, 713
NciI CCSGG 2 cut(s) 161, 406
NcoI CCATGG 2 cut(s) 186, 741
NdeII GATC 2 cut(s) 111, 628
NlaIII CATG 3 cut(s) 190, 574, 745
NlaIV GGNNCC 1 cut(s) 20
NmeAIII GCCGAG 2 cut(s) 23, 450
NmuCI GTSAC 1 cut(s) 695
NotI GCGGCCGC 1 cut(s) 493
NspV TTCGAA 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 743
PagI TCATGA 1 cut(s) 570
PcsI WCGNNNNNNNCGW 2 cut(s) 523, 700
PfeI GAWTC 6 cut(s) 347, 359, 368, 483, 673, 748
PkrI GCNGC 3 cut(s) 494, 497, 649
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 709
PspN4I GGNNCC 1 cut(s) 20
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 743
SacI GAGCTC 1 cut(s) 709
SatI GCNGC 3 cut(s) 493, 496, 648
Sau3AI GATC 2 cut(s) 111, 628
SchI GAGTC 1 cut(s) 471
ScrFI CCNGG 2 cut(s) 161, 406
SduI GDGCHC 3 cut(s) 152, 623, 709
SfcI CTRYAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 238
SgrAI CRCCGGYG 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
Sse9I AATT 2 cut(s) 209, 730
SsiI CCGC 7 cut(s) 32, 47, 492, 496, 506, 636, 648
SspMI CTAG 1 cut(s) 689
SstI GAGCTC 1 cut(s) 709
StyD4I CCNGG 2 cut(s) 159, 404
StyI CCWWGG 2 cut(s) 186, 741
TaaI ACNGT 2 cut(s) 330, 385
TaiI ACGT 1 cut(s) 356
TaqI TCGA 6 cut(s) 8, 238, 350, 366, 526, 538
TaqII GACCGA 1 cut(s) 600
TasI AATT 2 cut(s) 209, 730
TauI GCSGC 3 cut(s) 495, 498, 650
TfiI GAWTC 6 cut(s) 347, 359, 368, 483, 673, 748
TseFI GTSAC 1 cut(s) 695
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 2 cut(s) 339, 587
TspGWI ACGGA 2 cut(s) 134, 352
XapI RAATTY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 689
ZraI GACGTC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.