Rh6DG380100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000500
Physical Location & Seq
Forward (+)
57397866 .. 57398374
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG380100.1

Sequence Viewer

Length: 297 bp
ATGAGAAACAAGAGTGAAAGAAGAGGGGAGAGCTCAGACATGGTATTGAAGCTGCAGATGAATACAGGTACAACTAGCAAGGATGGAGTTATCTGGGCCGAACCCAGGACCATCAAGAAGGCTACCGGTAGTGTTTTCCCGGCGAATAGAAGGTTGGTGAAGACCATGGTTTTTGCTTCCGTTTTGCACTTCTTCGCCTCCATTTTATGTTCCTCTGGAGAAGGTGGTGGGAGGAAACGAGATATCCGAACTGCCAAAAAATTCAAGCAGGTAGTTCCACTTCAATATTACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.03

Weight (kDa)

10.62

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 49, 265, 284
AjnI CCWGG 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 33, 52
AluI AGCT 2 cut(s) 33, 52
Alw21I GWGCWC 1 cut(s) 35
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 260
AsiGI ACCGGT 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 96, 108
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 77, 119
BciT130I CCWGG 1 cut(s) 106
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 106, 140
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 96, 108
BmrFI CCNGG 2 cut(s) 106, 140
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 104, 165
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 104, 165
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 126, 140
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 104, 165
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 104, 138
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 96, 108
Csp6I GTAC 1 cut(s) 69
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 2 cut(s) 40, 166
CviJI RGCY 4 cut(s) 33, 52, 98, 122
CviKI_1 RGCY 4 cut(s) 33, 52, 98, 122
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 43, 169
FaiI YATR 3 cut(s) 41, 167, 208
FatI CATG 2 cut(s) 39, 165
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 126, 140
Hin1II CATG 2 cut(s) 43, 169
HpaII CCGG 2 cut(s) 126, 140
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 37, 248
Hpy188III TCNNGA 2 cut(s) 115, 216
HpyAV CCTTC 3 cut(s) 112, 144, 215
HpyCH4V TGCA 2 cut(s) 55, 187
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 2 cut(s) 43, 169
LpnPI CCDG 8 cut(s) 51, 79, 91, 118, 139, 153, 201, 254
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 1 cut(s) 75
MboII GAAGA 3 cut(s) 33, 172, 184
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 260
MnlI CCTC 4 cut(s) 17, 208, 223, 225
MspI CCGG 2 cut(s) 126, 140
MspR9I CCNGG 2 cut(s) 106, 140
MvaI CCWGG 1 cut(s) 106
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 43, 169
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 2 cut(s) 96, 108
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 35
SatI GCNGC 1 cut(s) 53
Sau96I GGNCC 2 cut(s) 96, 108
ScrFI CCNGG 2 cut(s) 106, 140
SduI GDGCHC 1 cut(s) 35
SetI ASST 6 cut(s) 35, 54, 70, 155, 226, 273
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 108
Sse9I AATT 1 cut(s) 260
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 104, 138
StyI CCWWGG 1 cut(s) 165
TasI AATT 1 cut(s) 260
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 260
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.