Rroxscaffold_4G00302450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000500
Physical Location & Seq
Reverse (-)
22828716 .. 22837218
8503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302450.1

Sequence Viewer

Length: 327 bp
ATGAGGGCAATACGTCAAACACCGTTAGATTGGATTAAGAAACGCACAGAAGCAGCAGAAATGGTGGTGAGGTTGCAGAACAACAATGGAGGAGACCAAACTGTCTGGGCCGAGACAGAGCCACATCTGGCGGGCCGCCAGAAGCCTATGCCGAAGAAGGAGGGCAGTGTGCTTCCGGCGAAGAGGAGGTTGGTGAAGACCATGGCTTTCACTAAAATTCTCCACTTCTTTGTCTCTCTTTGCTCTTCTGCTGGAGGAGGAACCACCACACCCAAATCCCCAAATGGCAAGAAATCCAAGCAGATAGTCCCAGACCCTAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.95

Weight (kDa)

10.49

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AciI CCGC 2 cut(s) 131, 136
AcsI RAATTY 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
Alw26I GTCTC 3 cut(s) 87, 107, 238
AoxI GGCC 2 cut(s) 108, 133
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 108, 133
AsuHPI GGTGA 2 cut(s) 79, 205
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 87, 107, 238
BisI GCNGC 2 cut(s) 54, 136
BlsI GCNGC 2 cut(s) 55, 137
BmgT120I GGNCC 2 cut(s) 108, 133
BmiI GGNNCC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 201
BseRI GAGGAG 3 cut(s) 105, 199, 270
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 2 cut(s) 110, 135
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 3 cut(s) 87, 107, 238
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 2 cut(s) 110, 135
Bso31I GGTCTC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 131, 136
BspANI GGCC 2 cut(s) 110, 135
BspLI GGNNCC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 24, 103
Bst6I CTCTTC 2 cut(s) 176, 250
BstC8I GCNNGC 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 201
BstMAI GTCTC 3 cut(s) 87, 107, 238
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 110, 135
BtgI CCRYGG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 108, 133
CviAII CATG 2 cut(s) 202, 324
CviJI RGCY 5 cut(s) 110, 121, 135, 145, 206
CviKI_1 RGCY 5 cut(s) 110, 121, 135, 145, 206
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 2 cut(s) 176, 250
EarI CTCTTC 2 cut(s) 176, 250
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 205, 327
FaiI YATR 3 cut(s) 149, 203, 325
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 201, 323
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 54, 136
Fsp4HI GCNGC 2 cut(s) 54, 136
GluI GCNGC 2 cut(s) 54, 136
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 110, 135
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 205, 327
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 79, 205
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 24, 103
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 205, 327
LguI GCTCTTC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 91, 113, 152, 189, 237
Lsp1109I GCAGC 1 cut(s) 65
MaeII ACGT 1 cut(s) 13
MboII GAAGA 4 cut(s) 166, 193, 208, 237
MluCI AATT 1 cut(s) 216
MnlI CCTC 7 cut(s) 63, 83, 154, 177, 180, 248, 251
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 201
NlaIII CATG 2 cut(s) 205, 327
NlaIV GGNNCC 1 cut(s) 262
NmeAIII GCCGAG 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 55, 137
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 2 cut(s) 108, 133
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 54, 136
Sau96I GGNCC 2 cut(s) 108, 133
SetI ASST 3 cut(s) 16, 74, 191
Sse9I AATT 1 cut(s) 216
SsiI CCGC 2 cut(s) 131, 136
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 24, 103
TaiI ACGT 1 cut(s) 16
TasI AATT 1 cut(s) 216
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 53
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.