RLG00000011637

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11267769 .. 11269584
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011637

Sequence Viewer

Length: 387 bp
ATGGTGTCGAAGCTTCGGAACCCTACAGGCGCGAAAGTTGTCCCACAGGTGGTGGCGAAGCTCCAGACAACGCCACAGGTGCTGGAAAAACTCAAGACGGAGGCTAATTGTTTCAAGCCCAAAAAGGGCTCTGTTTTCCCGACGAAAAGAAGGCTGGTGAAGACCATGGTGTTCCATTCCATTCTGAAATTCGTCGCCTCTGGTTTCTGTTCCATTAAAGAAGCCAATCCCATCTCACTTTCACAATCACACCCCAAAATCCCAAATGCTAAAAAATGCAACCAGAGCCAGATATTCCCCAACCTTGATGAACAGTTGGTCATACATCATGGTGTGGCCGTGATCGAGGGTCCTCGATCTCTACGTCTGCAGCATCCATTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.23

Weight (kDa)

10.19

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 49, 125
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 2 cut(s) 13, 61
AluI AGCT 2 cut(s) 13, 61
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 323
BfmI CTRYAG 2 cut(s) 24, 368
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 20, 351
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 125
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 49, 125
BseXI GCAGC 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 49, 125
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 342, 356
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 1 cut(s) 338
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 20, 351
BspMAI CTGCAG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 342, 356
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 345, 359
BstMBI GATC 2 cut(s) 342, 356
BstMWI GCNNNNNNNGC 2 cut(s) 79, 285
BstSFI CTRYAG 2 cut(s) 24, 368
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 2 cut(s) 166, 329
CviJI RGCY 9 cut(s) 13, 61, 104, 118, 129, 154, 224, 288, 338
CviKI_1 RGCY 9 cut(s) 13, 61, 104, 118, 129, 154, 224, 288, 338
DpnI GATC 2 cut(s) 344, 358
DpnII GATC 2 cut(s) 342, 356
EaeI YGGCCR 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 169, 332
FaiI YATR 3 cut(s) 167, 323, 330
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 165, 328
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 371
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 338
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 169, 332
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 11
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 18, 186
Hpy188III TCNNGA 3 cut(s) 64, 94, 139
Hpy99I CGWCG 2 cut(s) 145, 197
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 279, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 285
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 2 cut(s) 169, 332
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 342, 356
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 9 cut(s) 12, 32, 62, 68, 77, 140, 186, 296, 302
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 364
MalI GATC 2 cut(s) 344, 358
MboI GATC 2 cut(s) 342, 356
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 106, 188
MnlI CCTC 4 cut(s) 94, 208, 340, 363
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 330
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 79, 285
NcoI CCATGG 1 cut(s) 165
NdeII GATC 2 cut(s) 342, 356
NlaIII CATG 2 cut(s) 169, 332
NlaIV GGNNCC 2 cut(s) 20, 351
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PkrI GCNGC 1 cut(s) 372
PpuMI RGGWCCY 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 20, 351
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
PstI CTGCAG 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 2 cut(s) 342, 356
Sau96I GGNCC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 15, 51, 63, 81, 306, 367
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 2 cut(s) 24, 368
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 106, 188
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 315
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 8, 345, 355
TasI AATT 2 cut(s) 106, 188
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.