RLG00000011643

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11343872 .. 11344518
647 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011643

Sequence Viewer

Length: 477 bp
ATGGTGTCGAAGATTCAGAACTCTACAGGTGCAGAAGTTGTCCCACAGGTGGTGGCGAAGCCCAAGACAGTGCCACAGGTGGTCGACAAACTCAAGACGGAGGCTAATTGGTTCAAGCACAAGAAGGGCTCGGTTTTCCCGGCAAAAAGAAGGCTGGTGAAGACCATGATGTTCCATGCCATTCTGAATTTCGTGGCCTCTGGTTTTTGTTGCATTAAAGAAGCTAATCAAATCTCTCTTTCAAACCCCAGCATCCCAAATGCCAAAAAATGCGACCAGAACCAGATATTCCCAAACCTTGATGAGCAGTTGGCCATACATCATGTCCTTCGGAATGCCACATCAGAACCTGGAGTTGGAAAAGAAGGATTGGGGCAGCTCACCTGTTCCGATGTTGGATTCCATCGGCTCTTCACGTCCGGCCGTCGAAATTCCGATACGGGTGCTGAAAAGGACGGTGAAGAGGGGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.39

Weight (kDa)

9.54

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AcoI YGGCCR 2 cut(s) 312, 421
AcsI RAATTY 2 cut(s) 187, 430
AfiI CCNNNNNNNGG 2 cut(s) 49, 356
AgsI TTSAA 2 cut(s) 115, 243
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 2 cut(s) 224, 379
AluI AGCT 2 cut(s) 224, 379
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 3 cut(s) 195, 312, 421
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 2 cut(s) 187, 430
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 169, 373, 470
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 411
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 351
BcnI CCSGG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
Bme1390I CCNGG 2 cut(s) 140, 351
BmgBI CACGTC 1 cut(s) 417
BmrFI CCNGG 2 cut(s) 140, 351
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 356
BseBI CCWGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 49, 356
BseX3I CGGCCG 1 cut(s) 421
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 3 cut(s) 197, 314, 423
BsiEI CGRYCG 1 cut(s) 424
BsiSI CCGG 2 cut(s) 140, 420
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 49, 356
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 3 cut(s) 197, 314, 423
Bsp1286I GDGCHC 1 cut(s) 131
BspANI GGCC 3 cut(s) 197, 314, 423
BspQI GCTCTTC 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 70, 458
Bst6I CTCTTC 2 cut(s) 416, 456
BstF5I GGATG 1 cut(s) 252
BstMCI CGRYCG 1 cut(s) 424
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 138, 349
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 167
BstZI CGGCCG 1 cut(s) 421
BsuRI GGCC 3 cut(s) 197, 314, 423
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 350
CviAII CATG 3 cut(s) 166, 176, 323
EaeI YGGCCR 2 cut(s) 312, 421
EagI CGGCCG 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 416, 456
EarI CTCTTC 2 cut(s) 416, 456
EclXI CGGCCG 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 131
Eco52I CGGCCG 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 3 cut(s) 169, 179, 326
FaiI YATR 4 cut(s) 167, 177, 317, 324
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 165, 175, 322
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 377
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 377
GluI GCNGC 1 cut(s) 377
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 197, 314, 423
HapII CCGG 2 cut(s) 140, 420
Hin1II CATG 3 cut(s) 169, 179, 326
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 13, 399
HpaII CCGG 2 cut(s) 140, 420
HphI GGTGA 3 cut(s) 169, 373, 470
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 6 cut(s) 18, 186, 333, 346, 391, 436
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 4 cut(s) 118, 144, 338, 359
HpyCH4III ACNGT 2 cut(s) 70, 458
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 32, 213
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 3 cut(s) 169, 179, 326
LguI GCTCTTC 1 cut(s) 416
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 261
MaeII ACGT 1 cut(s) 416
MboII GAAGA 4 cut(s) 22, 172, 403, 473
MhlI GDGCHC 1 cut(s) 131
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 3 cut(s) 106, 187, 430
MluNI TGGCCA 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 337, 376
MnlI CCTC 3 cut(s) 94, 208, 457
Mox20I TGGCCA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 314
MseI TTAA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 2 cut(s) 140, 420
MspR9I CCNGG 2 cut(s) 140, 351
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 351
NciI CCSGG 1 cut(s) 140
NlaIII CATG 3 cut(s) 169, 179, 326
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 13, 399
PkrI GCNGC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 350
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 140, 351
SduI GDGCHC 1 cut(s) 131
SetI ASST 9 cut(s) 31, 51, 81, 226, 300, 352, 381, 386, 419
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 106, 187, 430
StyD4I CCNGG 2 cut(s) 138, 349
TaaI ACNGT 2 cut(s) 70, 458
TaiI ACGT 1 cut(s) 419
TaqI TCGA 3 cut(s) 8, 84, 427
TasI AATT 3 cut(s) 106, 187, 430
TfiI GAWTC 2 cut(s) 13, 399
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 75
XapI RAATTY 2 cut(s) 187, 430
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.