Rroxscaffold_7G00171000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000500
Physical Location & Seq
Reverse (-)
11391825 .. 11395426
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171000.1

Sequence Viewer

Length: 327 bp
ATGGTGTCGAAGCTTCAGAACCCAACAGGTGCGGAAGTTGCCCCACAGGTGGTGGCGAAGCCCAAGACAGTGCCACAGGTAGTCGACAAACTCAAGACGGAGGCTAATTGGTTCAAGCCCAAGAAGGGCTCTGTTTTCCCGGCAAAAAGAAGGCTGTCCTTCGGAATGCCACAGCAAAACCTGGAGTTGGGAAAGAAGGATTGGGGCAGCTCACCTGTTTCGATATCAGATTCTGTCGGCTCTTCATGTCCGGCCGTCGAAATTCCGGAACGGGTGCGGAAAAGGACGGTGAAGAGGGGAGAAGATCAGGGGTTTTTTTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.89

Weight (kDa)

10.07

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 2 cut(s) 32, 277
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 49, 125, 187
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 1 cut(s) 180
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 2 cut(s) 13, 210
AluI AGCT 2 cut(s) 13, 210
AlwNI CAGNNNCTG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 204, 301
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 1 cut(s) 140
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 140, 182
BmrFI CCNGG 2 cut(s) 140, 182
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 125, 187
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 49, 125, 187
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 254
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 3 cut(s) 140, 251, 266
BslI CCNNNNNNNGG 3 cut(s) 49, 125, 187
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 2 cut(s) 32, 277
BspANI GGCC 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 247
BssMI GATC 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 70, 289
Bst6I CTCTTC 2 cut(s) 247, 287
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 138, 180
BstV1I GCAGC 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 233
CviAII CATG 1 cut(s) 246
CviJI RGCY 9 cut(s) 13, 61, 104, 118, 129, 154, 210, 240, 254
CviKI_1 RGCY 9 cut(s) 13, 61, 104, 118, 129, 154, 210, 240, 254
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 247, 287
EarI CTCTTC 2 cut(s) 247, 287
EclXI CGGCCG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 249
FaiI YATR 1 cut(s) 247
FatI CATG 1 cut(s) 245
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 254
HapII CCGG 3 cut(s) 140, 251, 266
Hin1II CATG 1 cut(s) 249
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 230
HpaII CCGG 3 cut(s) 140, 251, 266
HphI GGTGA 2 cut(s) 204, 301
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 18, 164, 229
Hpy188III TCNNGA 2 cut(s) 94, 266
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 118, 144, 169, 190
HpyCH4III ACNGT 2 cut(s) 70, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
Hsp92II CATG 1 cut(s) 249
Kpn2I TCCGGA 1 cut(s) 265
Kzo9I GATC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 219
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 234, 304, 314
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 106, 261
MnlI CCTC 2 cut(s) 94, 288
MroI TCCGGA 1 cut(s) 265
MseI TTAA 1 cut(s) 325
MspI CCGG 3 cut(s) 140, 251, 266
MspR9I CCNGG 2 cut(s) 140, 182
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 140
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 247
PctI GAATGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 233
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 140, 182
SduI GDGCHC 1 cut(s) 131
SetI ASST 7 cut(s) 15, 31, 51, 81, 183, 212, 217
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 106, 261
SsiI CCGC 2 cut(s) 32, 277
StyD4I CCNGG 2 cut(s) 138, 180
TaaI ACNGT 2 cut(s) 70, 289
TaqI TCGA 4 cut(s) 8, 84, 221, 258
TasI AATT 2 cut(s) 106, 261
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.