Rorug06G0268000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000500
Physical Location & Seq
Reverse (-)
41443008 .. 41445831
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0268000.1

Sequence Viewer

Length: 735 bp
ATGAAGGCTAGAAAAAACAATTCCAACAACATGAACATGATGATGAATGGCAGTCCTCCTCCACCTCCTCCTCCTCAAATTGAAGGCAATGCCTACGCCAACTTCAACCACAACAATCCTTATGTTCAATATTCCCCAGTTCCCACGTCGAATTCACCTACCAAGCGTCCCATAGATAAGGTGCTTGACACATTGAATCATTGTGGTAAAAGGGTTGAAGGTGCCTCCAGAAGAGCAGACACCATTACGGACAATGTCTGGCATCACTTGAGAATGAGTCCTAGTCTTGCAGACGCAGCAGTGGCGAGGCTTACTCACGGGACAAAGGCTCTTACAAGAGGGGATGATAAAGTATTCCAGCAAAAATTTGAGACTGTGATGCTACAAGAGAAGCTCCTGCATTCATATGCTTGCTATCTCTCAACTTCTACTGGACCTGTAATTGGAGTGCTGTATATTTCCAATAAAAGAATAGCCTTTTGTAGTGATTTCTGTCACTATATTTCCCCAGCGCATCCGAACACATATTTTAAGGTGGTGGTGCAGCTTGATCAGTTAAGAGCAGTGAATCCTTCTGCAAACAGATGGAACCCTTCAGAGAAATACATACAGATAGTAACAAGAGACGGTCATGAGTTCTGGTTCATGGGGTTCATATCTTATGACAAGGCCCTCAGTAACCTAACCCAAGCTCTCAACCCTAGTTCTGGTGGAACTCATCTCAACCCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.37

Weight (kDa)

9.43

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAM PF02893 118 - 232 1e-16 GRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AcsI RAATTY 2 cut(s) 151, 365
AcuI CTGAAG 1 cut(s) 579
AfiI CCNNNNNNNGG 2 cut(s) 443, 707
AgsI TTSAA 5 cut(s) 83, 106, 128, 196, 218
AjiI CACGTC 1 cut(s) 147
AluBI AGCT 3 cut(s) 394, 547, 692
AluI AGCT 3 cut(s) 394, 547, 692
Alw26I GTCTC 2 cut(s) 365, 618
AoxI GGCC 1 cut(s) 669
ApeKI GCWGC 2 cut(s) 296, 544
ApoI RAATTY 2 cut(s) 151, 365
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 434, 670
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 308, 556
BccI CCATC 1 cut(s) 579
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 365, 618
BfaI CTAG 3 cut(s) 9, 282, 702
BisI GCNGC 2 cut(s) 297, 545
BlsI GCNGC 2 cut(s) 298, 546
Bme18I GGWCC 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 434, 670
BmiI GGNNCC 2 cut(s) 223, 590
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 3 cut(s) 271, 369, 523
BmuI ACTGGG 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 298, 330
BpmI CTGGAG 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 707
Bse1I ACTGG 2 cut(s) 137, 436
Bse3DI GCAATG 1 cut(s) 94
BseGI GGATG 2 cut(s) 349, 514
BseLI CCNNNNNNNGG 2 cut(s) 443, 707
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 688
BseNI ACTGG 2 cut(s) 137, 436
BseRI GAGGAG 4 cut(s) 48, 57, 60, 63
BseXI GCAGC 2 cut(s) 308, 556
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 1 cut(s) 671
BshNI GGYRCC 1 cut(s) 221
BslFI GGGAC 2 cut(s) 153, 334
BslI CCNNNNNNNGG 2 cut(s) 443, 707
BsmAI GTCTC 2 cut(s) 365, 618
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 153, 334
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 671
Bsp143I GATC 1 cut(s) 550
BspANI GGCC 1 cut(s) 671
BspCNI CTCAG 1 cut(s) 687
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 223, 590
BspQI GCTCTTC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 2 cut(s) 137, 436
BssMI GATC 1 cut(s) 550
Bst4CI ACNGT 2 cut(s) 376, 629
Bst6I CTCTTC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 349, 514
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 2 cut(s) 365, 618
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 2 cut(s) 296, 302
BstV1I GCAGC 2 cut(s) 308, 556
BsuRI GGCC 1 cut(s) 671
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 349, 514
BtsI GCAGTG 2 cut(s) 306, 570
BtsIMutI CAGTG 2 cut(s) 306, 570
Cac8I GCNNGC 1 cut(s) 412
CciI TCATGA 1 cut(s) 631
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 434, 670
CseI GACGC 2 cut(s) 155, 302
CviAII CATG 4 cut(s) 31, 37, 632, 646
CviJI RGCY 8 cut(s) 8, 310, 329, 394, 476, 547, 671, 692
CviKI_1 RGCY 8 cut(s) 8, 310, 329, 394, 476, 547, 671, 692
DdeI CTNAG 1 cut(s) 674
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 4 cut(s) 34, 40, 635, 649
FaqI GGGAC 2 cut(s) 153, 334
FatI CATG 4 cut(s) 30, 36, 631, 645
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 297, 545
FokI GGATG 2 cut(s) 356, 501
Fsp4HI GCNGC 2 cut(s) 297, 545
FspBI CTAG 3 cut(s) 9, 282, 702
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 297, 545
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 671
HgaI GACGC 2 cut(s) 155, 302
HhaI GCGC 1 cut(s) 514
Hin1II CATG 4 cut(s) 34, 40, 635, 649
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 3 cut(s) 196, 277, 568
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 519, 598
Hpy188III TCNNGA 2 cut(s) 228, 632
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 4 cut(s) 77, 212, 582, 603
HpyCH4III ACNGT 2 cut(s) 376, 629
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 290, 400, 544, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 302
HpyF3I CTNAG 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 4 cut(s) 34, 40, 635, 649
HspAI GCGC 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 1 cut(s) 550
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 2 cut(s) 308, 556
LweI GCATC 3 cut(s) 271, 369, 523
MaeI CTAG 3 cut(s) 9, 282, 702
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 3 cut(s) 494, 616, 677
MalI GATC 1 cut(s) 552
MboI GATC 1 cut(s) 550
MboII GAAGA 1 cut(s) 243
MluCI AATT 5 cut(s) 19, 78, 151, 365, 441
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 48
MseI TTAA 2 cut(s) 531, 557
MslI CAYNNNNRTG 3 cut(s) 35, 41, 405
Mva1269I GAATGC 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 296, 302
NdeI CATATG 1 cut(s) 406
NdeII GATC 1 cut(s) 550
NlaIII CATG 4 cut(s) 34, 40, 635, 649
NlaIV GGNNCC 2 cut(s) 223, 590
NmuCI GTSAC 1 cut(s) 494
PagI TCATGA 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 226
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 196, 568
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 298, 546
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 223, 590
PspPI GGNCC 2 cut(s) 434, 670
PsyI GACNNNGTC 1 cut(s) 254
RseI CAYNNNNRTG 3 cut(s) 35, 41, 405
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 531, 557
SatI GCNGC 2 cut(s) 297, 545
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 2 cut(s) 434, 670
SchI GAGTC 1 cut(s) 286
SfaNI GCATC 3 cut(s) 271, 369, 523
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 3 cut(s) 35, 41, 405
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 5 cut(s) 19, 78, 151, 365, 441
SspI AATATT 1 cut(s) 131
SspMI CTAG 3 cut(s) 9, 282, 702
TaaI ACNGT 2 cut(s) 376, 629
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 149
TasI AATT 5 cut(s) 19, 78, 151, 365, 441
TfiI GAWTC 2 cut(s) 196, 568
Tru1I TTAA 2 cut(s) 531, 557
Tru9I TTAA 2 cut(s) 531, 557
TscAI CASTG 2 cut(s) 306, 570
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 2 cut(s) 296, 544
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 6 cut(s) 17, 47, 59, 393, 634, 643
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 2 cut(s) 306, 570
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 151, 365
XspI CTAG 3 cut(s) 9, 282, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.