FvH4_2g28120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22159065 .. 22159497
433 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28120.t1

Sequence Viewer

Length: 345 bp
ATGGTGTCGAAGCAGCTTCAGAACCATGCAGGTGCGGCAATTCTCGGGTCGTCCGAGACAGACCCAGCAAAGCCGGTGGGCAAGCTCGAGTCGACGGAGGCCAGTTGGTGCAAGCCCAAGAAGGGCAGTGTTTTTCCGGTGAAGAGGAGGTTGGTAAAGACCATGATGTTCAATTCCATCGTGAAATTCATTGCCTCTATTGTCTCTTCCCCTGAACTAATACCCATTCCCATCATCTCTCTTTCACCACCCAAAACCCCAAATGCCAAAAAATGCAACCACACTCAAATATTCCCATATCAAAACCCAGACCGTGATGGCAGGTTCGCAATGCATCGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

10.21

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 2 cut(s) 20, 312
AccI GTMKAC 1 cut(s) 92
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 16, 85
AluI AGCT 2 cut(s) 16, 85
Alw26I GTCTC 2 cut(s) 50, 208
Ama87I CYCGRG 2 cut(s) 44, 86
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 151, 237
AvaI CYCGRG 2 cut(s) 44, 86
BbvI GCAGC 1 cut(s) 25
BccI CCATC 3 cut(s) 185, 239, 311
BcoDI GTCTC 2 cut(s) 50, 208
BfuAI ACCTGC 2 cut(s) 20, 312
BisI GCNGC 2 cut(s) 14, 36
BlsI GCNGC 2 cut(s) 15, 37
BmeT110I CYCGRG 2 cut(s) 44, 86
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 189, 336
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 189, 336
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 101
BsiHKCI CYCGRG 2 cut(s) 44, 86
BsiSI CCGG 2 cut(s) 74, 137
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 50, 208
BsnI GGCC 1 cut(s) 101
BsoBI CYCGRG 2 cut(s) 44, 86
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 101
BspMI ACCTGC 2 cut(s) 20, 312
BsrDI GCAATG 2 cut(s) 189, 336
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 137, 211
BstC8I GCNNGC 2 cut(s) 83, 113
BstMAI GTCTC 2 cut(s) 50, 208
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
BveI ACCTGC 2 cut(s) 20, 312
Cac8I GCNNGC 2 cut(s) 83, 113
Cfr10I RCCGGY 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 2 cut(s) 26, 163
CviJI RGCY 5 cut(s) 16, 73, 85, 101, 115
CviKI_1 RGCY 5 cut(s) 16, 73, 85, 101, 115
Eam1104I CTCTTC 2 cut(s) 137, 211
EarI CTCTTC 2 cut(s) 137, 211
Eco88I CYCGRG 2 cut(s) 44, 86
EcoT22I ATGCAT 1 cut(s) 336
FaeI CATG 2 cut(s) 29, 166
FaiI YATR 3 cut(s) 27, 164, 298
FatI CATG 2 cut(s) 25, 162
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 14, 36
Fsp4HI GCNGC 2 cut(s) 14, 36
GluI GCNGC 2 cut(s) 14, 36
GsaI CCCAGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 74, 137
Hin1II CATG 2 cut(s) 29, 166
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 74, 137
HphI GGTGA 2 cut(s) 151, 237
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 21, 55
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 2 cut(s) 97, 342
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 29, 111, 276, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 29, 166
LpnPI CCDG 8 cut(s) 15, 78, 87, 115, 150, 225, 307, 321
Lsp1109I GCAGC 1 cut(s) 25
MboII GAAGA 2 cut(s) 154, 198
MluCI AATT 3 cut(s) 39, 172, 185
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 91, 138, 141, 205
Mph1103I ATGCAT 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 2 cut(s) 74, 137
MwoI GCNNNNNNNGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 29, 166
NsiI ATGCAT 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PkrI GCNGC 2 cut(s) 15, 37
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 30
SalI GTCGAC 1 cut(s) 91
SatI GCNGC 2 cut(s) 14, 36
SchI GAGTC 1 cut(s) 98
SetI ASST 5 cut(s) 18, 34, 87, 152, 326
Sfr274I CTCGAG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 3 cut(s) 39, 172, 185
SsiI CCGC 1 cut(s) 35
SspI AATATT 1 cut(s) 291
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 8, 87, 92
TasI AATT 3 cut(s) 39, 172, 185
TauI GCSGC 1 cut(s) 38
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.