Rorug06G0268200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000500
Physical Location & Seq
Forward (+)
41462057 .. 41462530
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0268200.1

Sequence Viewer

Length: 474 bp
ATGGCAGAATCTTGGGTTTCTTCATCAATCCAAGAAAACCCAAATGAGGAGGAAACAAATGAGTCATTGGAATCAATCTTTTCTTCTTCTACGTTCAACCGACAAGTGGAGCGGGAAGAAGGAGAATTGCCCAAGCTAAGGAGCTTATCGTCGAGCGGCAGCAGGAAGAAGAAGAAGAAGAATCAGGTTTTGCTTGAAGGGTATGTTGATTCGGCTGATGAGGACGATCTGTCGAGGACCAAGAGCTTAACGGATGAGGATCTCGATGAGCTCAAAGGGTGCTTGGATCTGGGATTTGGGTTCAGCTATGAAGAAATTCCCGAGCTCTGTAACACCTTGCCTGCTCTTGAGCTTTGTTACTCTATGAGCCAGAGGTTCATGGACAAGTCGCCGGAGACCTCTCCTGCTGCACTGGATTCCTGCTCTTCTGTGTCTAGTCCGATTGCCAATTGGAAGATCTCCAGTCCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

4.39

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 83 - 137 4.9e-25 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 112, 156
AciI CCGC 2 cut(s) 112, 156
AclWI GGATC 2 cut(s) 267, 294
AcsI RAATTY 1 cut(s) 315
AfiI CCNNNNNNNGG 3 cut(s) 46, 106, 138
AgsI TTSAA 2 cut(s) 97, 197
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 7 cut(s) 136, 144, 246, 271, 306, 325, 352
AluI AGCT 7 cut(s) 136, 144, 246, 271, 306, 325, 352
Alw21I GWGCWC 2 cut(s) 273, 327
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 267, 294
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 159, 407
ApoI RAATTY 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 273, 327
Bbv12I GWGCWC 2 cut(s) 273, 327
BbvI GCAGC 2 cut(s) 171, 394
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 435
BglII AGATCT 1 cut(s) 456
BisI GCNGC 3 cut(s) 157, 160, 408
BlsI GCNGC 3 cut(s) 158, 161, 409
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 237
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 106, 138
Bse1I ACTGG 2 cut(s) 417, 462
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 46, 106, 138
BseNI ACTGG 2 cut(s) 417, 462
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 171, 394
BsgI GTGCAG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 273, 327
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 46, 106, 138
BsmAI GTCTC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 273, 327
Bsp143I GATC 4 cut(s) 226, 259, 286, 456
BspACI CCGC 2 cut(s) 112, 156
BspPI GGATC 2 cut(s) 267, 294
BspQI GCTCTTC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 2 cut(s) 112, 156
BsrI ACTGG 2 cut(s) 417, 462
BssMI GATC 4 cut(s) 226, 259, 286, 456
Bst2UI CCWGG 1 cut(s) 468
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 229, 262, 289, 459
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 226, 259, 286, 456
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 171, 394
BstX2I RGATCY 3 cut(s) 259, 286, 456
BstYI RGATCY 3 cut(s) 259, 286, 456
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 1 cut(s) 379
CviJI RGCY 9 cut(s) 136, 144, 215, 246, 271, 306, 325, 352, 369
CviKI_1 RGCY 9 cut(s) 136, 144, 215, 246, 271, 306, 325, 352, 369
DdeI CTNAG 1 cut(s) 137
DpnI GATC 4 cut(s) 228, 261, 288, 458
DpnII GATC 4 cut(s) 226, 259, 286, 456
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 2 cut(s) 271, 325
Eco24I GRGCYC 2 cut(s) 273, 327
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 2 cut(s) 271, 325
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 2 cut(s) 271, 325
EcoRII CCWGG 1 cut(s) 466
EcoT38I GRGCYC 2 cut(s) 273, 327
FaeI CATG 1 cut(s) 382
FaiI YATR 4 cut(s) 204, 309, 365, 380
FatI CATG 1 cut(s) 378
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 157, 160, 408
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 2 cut(s) 273, 327
Fsp4HI GCNGC 3 cut(s) 157, 160, 408
FspBI CTAG 1 cut(s) 435
GluI GCNGC 3 cut(s) 157, 160, 408
GsuI CTGGAG 1 cut(s) 445
HapII CCGG 1 cut(s) 392
Hin1II CATG 1 cut(s) 382
HinfI GANTC 6 cut(s) 8, 62, 71, 181, 209, 416
HpaII CCGG 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 3 cut(s) 263, 320, 347
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 113, 191
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 410
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 4 cut(s) 226, 259, 286, 456
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 2 cut(s) 109, 141
Lsp1109I GCAGC 2 cut(s) 171, 394
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 329, 356
MalI GATC 4 cut(s) 228, 261, 288, 458
MbiI CCGCTC 2 cut(s) 112, 156
MboI GATC 4 cut(s) 226, 259, 286, 456
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 3 cut(s) 259, 286, 456
MhlI GDGCHC 2 cut(s) 273, 327
MluCI AATT 3 cut(s) 125, 315, 448
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 7 cut(s) 40, 43, 214, 228, 250, 366, 409
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 248
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 468
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 468
NdeII GATC 4 cut(s) 226, 259, 286, 456
NlaIII CATG 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 8, 71, 181, 209, 416
PkrI GCNGC 3 cut(s) 158, 161, 409
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 273, 327
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 3 cut(s) 259, 286, 456
SacI GAGCTC 2 cut(s) 273, 327
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 3 cut(s) 157, 160, 408
Sau3AI GATC 4 cut(s) 226, 259, 286, 456
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 2 cut(s) 273, 327
SinI GGWCC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 125, 315, 448
SsiI CCGC 2 cut(s) 112, 156
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 2 cut(s) 273, 327
StyD4I CCNGG 1 cut(s) 466
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 152, 233, 264
TasI AATT 3 cut(s) 125, 315, 448
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 5 cut(s) 8, 71, 181, 209, 416
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 417
TseI GCWGC 2 cut(s) 159, 407
TspDTI ATGAA 3 cut(s) 12, 324, 367
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.