RLG00000011636

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11229852 .. 11231396
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011636

Sequence Viewer

Length: 324 bp
ATGGTCTCGTCGATCGACCTTGGAGGTGGTGCTGTTGTATACGGCGAGATTCTCGACCGAGGGCGGAGAAGGGAGCTATCACATGCCGCTCATGTGTATCTATATCTCTACATACCATATGCCCGGATGCAGTTCGGGAAGGCAATGCAGATGAATAGCGAGGGAGTTGTCTCGGCAGCCTCTAAGCCGAAGATCGCAACTGTGATACCAGCACAGAGAATATCGGTGAAGCGAATGGCGTTCGATGCCATGGTCAGTTCTGTGATCCCTTGTCTCCCTTGTCTTAATGGCTCATCATCTTCCTCCTCGTCTCCCTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.44

Weight (kDa)

9.56

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 39
AciI CCGC 2 cut(s) 64, 87
AclWI GGATC 1 cut(s) 259
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 4 cut(s) 10, 175, 278, 315
AlwI GGATC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 238
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 4 cut(s) 10, 175, 278, 315
BisI GCNGC 2 cut(s) 87, 177
BlsI GCNGC 2 cut(s) 88, 178
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 117, 235
BpuMI CCSGG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 19, 58, 249
Bse3DI GCAATG 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 19, 58, 249
BseGI GGATG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 2 cut(s) 15, 58
BsiEI CGRYCG 2 cut(s) 15, 58
BsiSI CCGG 1 cut(s) 124
BsmAI GTCTC 4 cut(s) 10, 175, 278, 315
BsmBI CGTCTC 1 cut(s) 315
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 12, 192, 264
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 2 cut(s) 64, 87
BspPI GGATC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 19, 58, 249
BssMI GATC 3 cut(s) 12, 192, 264
BssNAI GTATAC 1 cut(s) 40
BssT1I CCWWGG 2 cut(s) 19, 249
Bst1107I GTATAC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 3 cut(s) 15, 195, 267
BstMAI GTCTC 4 cut(s) 10, 175, 278, 315
BstMBI GATC 3 cut(s) 12, 192, 264
BstMCI CGRYCG 2 cut(s) 15, 58
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 188
BstZ17I GTATAC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 132
CviAII CATG 3 cut(s) 83, 92, 250
CviJI RGCY 4 cut(s) 76, 179, 187, 291
CviKI_1 RGCY 4 cut(s) 76, 179, 187, 291
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 14, 194, 266
DpnII GATC 3 cut(s) 12, 192, 264
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 19, 249
Eco31I GGTCTC 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 19, 249
ErhI CCWWGG 2 cut(s) 19, 249
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 3 cut(s) 86, 95, 253
FaiI YATR 8 cut(s) 40, 84, 93, 103, 113, 118, 120, 251
FatI CATG 3 cut(s) 82, 91, 249
FauNDI CATATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 87, 177
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 87, 177
GluI GCNGC 2 cut(s) 87, 177
HapII CCGG 1 cut(s) 124
Hin1II CATG 3 cut(s) 86, 95, 253
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 124
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 53, 136
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 63, 133
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 130, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 3 cut(s) 86, 95, 253
Kzo9I GATC 3 cut(s) 12, 192, 264
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 137, 222
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 2 cut(s) 117, 235
MalI GATC 3 cut(s) 14, 194, 266
MbiI CCGCTC 1 cut(s) 89
MboI GATC 3 cut(s) 12, 192, 264
MboII GAAGA 2 cut(s) 202, 291
MnlI CCTC 6 cut(s) 17, 53, 154, 190, 313, 316
MseI TTAA 2 cut(s) 285, 322
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 118
NdeII GATC 3 cut(s) 12, 192, 264
NlaIII CATG 3 cut(s) 86, 95, 253
NmeAIII GCCGAG 1 cut(s) 152
NspI RCATGY 1 cut(s) 86
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 88, 178
Ple19I CGATCG 1 cut(s) 15
PvuI CGATCG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 285, 322
SatI GCNGC 2 cut(s) 87, 177
Sau3AI GATC 3 cut(s) 12, 192, 264
ScrFI CCNGG 1 cut(s) 124
SetI ASST 3 cut(s) 21, 28, 78
SfaNI GCATC 2 cut(s) 117, 235
SsiI CCGC 2 cut(s) 64, 87
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 19, 249
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 4 cut(s) 11, 15, 54, 243
TaqII GACCGA 1 cut(s) 72
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 285, 322
Tru9I TTAA 2 cut(s) 285, 322
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 167
XceI RCATGY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.