pycom10g14510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000500
Physical Location & Seq
Reverse (-)
17892687 .. 17892992
306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14510.1

Sequence Viewer

Length: 306 bp
ATGGCAGTGAGGGAAAATATTGGAGGAGCTGCAGAAAAGGGGCTGAAGCAGCAGAAGAACCCAGATGTGAATGACGGGAAAGAAGCAGAGAAAGCTATGAAGATGAAGCCGAACTCAACAGAAGAGGAGATGATGAAGATCATGGTTCCGAGGGAGACAAACGGCTCATGCTTCAAGCCAAAAGCTGGAAGTGTGTTTCCTGCCAAGAGAAAATCCGTGAAACGCATGATGTTTGATCGTTTTGTGCTCAAGCAGTTTGGCTCCTCTGCTGTGAGCGTGTGGCCTCCCAGTCCCCACAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.25

Weight (kDa)

9.95

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 3 cut(s) 29, 95, 185
AluI AGCT 3 cut(s) 29, 95, 185
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 29, 49
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 16, 61
BceAI ACGGC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 30, 50
BlsI GCNGC 2 cut(s) 31, 51
BmiI GGNNCC 2 cut(s) 147, 262
BmrI ACTGGG 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 149
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 3 cut(s) 39, 140, 253
BseXI GCAGC 2 cut(s) 16, 61
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 138, 235
BspANI GGCC 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 147, 262
BspMAI CTGCAG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 2 cut(s) 138, 235
Bst6I CTCTTC 1 cut(s) 117
BstKTI GATC 2 cut(s) 141, 238
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 138, 235
BstMWI GCNNNNNNNGC 2 cut(s) 49, 92
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 16, 61
BsuRI GGCC 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
CviAII CATG 3 cut(s) 142, 168, 226
CviJI RGCY 9 cut(s) 29, 43, 95, 109, 165, 178, 185, 261, 283
CviKI_1 RGCY 9 cut(s) 29, 43, 95, 109, 165, 178, 185, 261, 283
DpnI GATC 2 cut(s) 140, 237
DpnII GATC 2 cut(s) 138, 235
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 65
FaeI CATG 3 cut(s) 145, 171, 229
FaiI YATR 4 cut(s) 98, 143, 169, 227
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 141, 167, 225
Fnu4HI GCNGC 2 cut(s) 30, 50
Fsp4HI GCNGC 2 cut(s) 30, 50
GluI GCNGC 2 cut(s) 30, 50
HaeIII GGCC 1 cut(s) 283
Hin1II CATG 3 cut(s) 145, 171, 229
Hpy188I TCNGA 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 92
Hsp92II CATG 3 cut(s) 145, 171, 229
Kzo9I GATC 2 cut(s) 138, 235
LmnI GCTCC 2 cut(s) 26, 266
LpnPI CCDG 4 cut(s) 75, 171, 213, 301
Lsp1109I GCAGC 2 cut(s) 16, 61
MalI GATC 2 cut(s) 140, 237
MboI GATC 2 cut(s) 138, 235
MboII GAAGA 4 cut(s) 67, 112, 134, 148
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 6 cut(s) 3, 17, 118, 144, 274, 294
MwoI GCNNNNNNNGC 2 cut(s) 49, 92
NdeII GATC 2 cut(s) 138, 235
NlaIII CATG 3 cut(s) 145, 171, 229
NlaIV GGNNCC 2 cut(s) 147, 262
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 2 cut(s) 31, 51
PspN4I GGNNCC 2 cut(s) 147, 262
PstI CTGCAG 1 cut(s) 34
SatI GCNGC 2 cut(s) 30, 50
Sau3AI GATC 2 cut(s) 138, 235
SduI GDGCHC 1 cut(s) 249
SetI ASST 3 cut(s) 31, 97, 187
SfcI CTRYAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SspI AATATT 1 cut(s) 19
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 29, 49
TspDTI ATGAA 3 cut(s) 113, 119, 149
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.