Rh6CG393200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000500
Physical Location & Seq
Forward (+)
57993776 .. 58005816
12041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG393200.1

Sequence Viewer

Length: 345 bp
ATGAATAGCGAGAGAGTTGTCTCGGCAGCCTCTAAGCCAAAGATCGCAACTGTGATACCAGCACAGAGAACATCGGTGAAGCGAATGGCGTTCGATGCCATGGTCAGTTCTGTGATCCCTTGTCTCCCTTGTCTTAATGGCTCATCATCTTCCTCCTCCCCTGGAGCGGACCTTGACCAGCCTAATGACGCTAACAACACCCATGCCAACCATCCTAGTGTTAGTGGAGAAGGAAAACACAGACATAGTGCAAATGCAGAACTTTGGCATATTTTGGTGATTCTTAAAACAGATAACAGTGTAGAGAGTCTTTGTTGGGATTCAGTTCTGTTTGGCTGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.18

Weight (kDa)

6.49

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 167
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 166
AjnI CCWGG 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 25, 128
AlwI GGATC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 88, 289
AvaII GGWCC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 25, 128
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 99, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 99, 160
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 25, 128
Bsp143I GATC 2 cut(s) 42, 114
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 99, 160
BssMI GATC 2 cut(s) 42, 114
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 52, 299
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 45, 117
BstMAI GTCTC 2 cut(s) 25, 128
BstMBI GATC 2 cut(s) 42, 114
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 197
CviAII CATG 2 cut(s) 100, 203
CviJI RGCY 5 cut(s) 29, 37, 141, 181, 336
CviKI_1 RGCY 5 cut(s) 29, 37, 141, 181, 336
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 44, 116
DpnII GATC 2 cut(s) 42, 114
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 103, 206
FaiI YATR 4 cut(s) 101, 204, 246, 270
FatI CATG 2 cut(s) 99, 202
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 183
HgaI GACGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 103, 206
HinfI GANTC 3 cut(s) 280, 307, 320
HphI GGTGA 2 cut(s) 88, 289
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 52, 299
HpyCH4V TGCA 2 cut(s) 251, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 2 cut(s) 103, 206
Kzo9I GATC 2 cut(s) 42, 114
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 72, 147, 174, 191, 322
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 216
MalI GATC 2 cut(s) 44, 116
MbiI CCGCTC 1 cut(s) 167
MboI GATC 2 cut(s) 42, 114
MboII GAAGA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 3 cut(s) 40, 163, 166
MseI TTAA 3 cut(s) 135, 285, 343
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 42, 114
NlaIII CATG 2 cut(s) 103, 206
PfeI GAWTC 2 cut(s) 280, 320
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 3 cut(s) 135, 285, 343
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 42, 114
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 162
SetI ASST 1 cut(s) 174
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 216
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 52, 299
TaqI TCGA 1 cut(s) 93
TfiI GAWTC 2 cut(s) 280, 320
Tru1I TTAA 3 cut(s) 135, 285, 343
Tru9I TTAA 3 cut(s) 135, 285, 343
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 169
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.