pycom05g16520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000500
Physical Location & Seq
Reverse (-)
19778526 .. 19778792
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16520.1

Sequence Viewer

Length: 267 bp
ATGGCACTGAGGGCAAACATTGGAGAGGCTGAAGAGAAAGGGACGAAGAAGCAGAAGAATCCAGATGGTCGGGAAATCAAGATGATGGTTCAGCGGGAGACACAAAACTACTCATGCTTCAAGCCAAAAGTTGGAAGTGTGTTTCCCGCCAAGAGAAAATCAGTGAAACGTATGATGTTTGATCGTTTAGTTGCCTGCTTTGGTTCATTTCCTCATAGTCCTCCTTCCTCATCATCAGCTTTGGCATCCCAAGCCCCAAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

10.15

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AciI CCGC 2 cut(s) 94, 147
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 92
BccI CCATC 2 cut(s) 59, 79
BcoDI GTCTC 1 cut(s) 92
BmsI GCATC 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 2 cut(s) 94, 147
BssMI GATC 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 11, 251
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 5, 168
Cac8I GCNNGC 1 cut(s) 196
CviAII CATG 1 cut(s) 114
CviJI RGCY 4 cut(s) 29, 124, 239, 254
CviKI_1 RGCY 4 cut(s) 29, 124, 239, 254
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 51
FaeI CATG 1 cut(s) 117
FaiI YATR 3 cut(s) 115, 173, 216
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 113
FauI CCCGC 2 cut(s) 87, 154
FokI GGATG 1 cut(s) 232
Hin1II CATG 1 cut(s) 117
HinfI GANTC 1 cut(s) 58
Hpy188III TCNNGA 3 cut(s) 62, 71, 79
HpyAV CCTTC 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 251
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 2 cut(s) 75, 208
LweI GCATC 1 cut(s) 254
MaeII ACGT 1 cut(s) 169
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 44, 58, 67
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 3, 19, 222, 231, 238
MspA1I CMGCKG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 11, 251
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 117
PfeI GAWTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 131
Sau3AI GATC 1 cut(s) 181
SetI ASST 2 cut(s) 172, 241
SfaNI GCATC 1 cut(s) 254
SsiI CCGC 2 cut(s) 94, 147
TaiI ACGT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 2 cut(s) 12, 168
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 2 cut(s) 12, 168
Van91I CCANNNNNTGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.