Rh6CG392500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000500
Physical Location & Seq
Forward (+)
57877308 .. 57877637
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG392500.1

Sequence Viewer

Length: 330 bp
ATGGTGTCGAAGCTTCAGAACTCTACAGGTGTGGAAGTTGTCCCACAGGTGGTGGCGAAGCCCAAGACAGTGCCACAGGTGGTGGACAAACTCAAGACGGAGGCTAATTGGTTCAAGCCCAAGAAGGGCTCTGTTTTCCCGGCAAAAAGAAGGCTGGTGAAAACCATGGTGTTCCATTTCATTCTGAATTTCGTGGCCTCTGGTTTCTGTTGCATTAAAGAAGCTAATCAAATCTCTCTTTCAAAACCCAAAATCCCAAATGCCAAAAAATGCGACCAGAACCAGATATTCCCAAACCTTGATGAGCAGTTGGCCTTACATCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.2

Weight (kDa)

9.87

Isoelectric Point (pI)

21.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 49, 125
AgsI TTSAA 2 cut(s) 115, 243
AluBI AGCT 2 cut(s) 13, 224
AluI AGCT 2 cut(s) 13, 224
AoxI GGCC 2 cut(s) 195, 312
ApoI RAATTY 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 169
BanII GRGCYC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 125
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 49, 125
BshFI GGCC 2 cut(s) 197, 314
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 49, 125
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 197, 314
Bsp1286I GDGCHC 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 2 cut(s) 197, 314
BssECI CCNNGG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 197, 314
BtgI CCRYGG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 75
CviAII CATG 2 cut(s) 166, 323
CviJI RGCY 9 cut(s) 13, 61, 104, 118, 129, 154, 197, 224, 314
CviKI_1 RGCY 9 cut(s) 13, 61, 104, 118, 129, 154, 197, 224, 314
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 169, 326
FaiI YATR 2 cut(s) 167, 324
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 165, 322
FriOI GRGCYC 1 cut(s) 131
HaeIII GGCC 2 cut(s) 197, 314
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 169, 326
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 18, 186
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 118, 144
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 213
Hsp92II CATG 2 cut(s) 169, 326
LpnPI CCDG 8 cut(s) 12, 32, 62, 140, 153, 186, 290, 296
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 106, 187
MnlI CCTC 2 cut(s) 94, 208
MseI TTAA 1 cut(s) 216
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 140
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 169, 326
SaqAI TTAA 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 15, 31, 51, 81, 226, 300
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 106, 187
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 106, 187
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.