FvH4_2g28230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22215850 .. 22216188
339 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28230.t1

Sequence Viewer

Length: 339 bp
ATGGCAGCTGAGAAGGCAATGAAGAAGAGTCACTCAAGGAGCAACTATAAGGCATCGGTGGTCTTGATCAGTAACACCACCGCGACAAGAACTGCGTGGTCGAAACCAAACATTGCAAGTGTAATTCCGGCAAAGAGGAGGTCAGTGAAGCGAATGATTTTCGATGACATGGTGAAATCTGCAGCCTCTCTTGTGTTTTATTGCTGTTCCTCGTCATCGTCATCCTCTGCAGACTCTGAAGATGATGAGGTGTCCAACTCGTACGAGGCTACCTGCGGAAGCAAGAATGCCAAGAAGACCAGTGCCATATTTCCAGATCCATCGACTCAGCTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.07

Weight (kDa)

9.41

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 81, 276
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 263
AluBI AGCT 2 cut(s) 8, 331
AluI AGCT 2 cut(s) 8, 331
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 5, 182
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsuHPI GGTGA 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 17, 194
BccI CCATC 1 cut(s) 328
BclI TGATCA 1 cut(s) 66
BfmI CTRYAG 2 cut(s) 180, 228
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 2 cut(s) 6, 183
BlsI GCNGC 2 cut(s) 7, 184
BmsI GCATC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 2 cut(s) 24, 111
BseGI GGATG 1 cut(s) 221
BseMI GCAATG 2 cut(s) 24, 111
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 17, 194
Bsh1236I CGCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 128
BsiWI CGTACG 1 cut(s) 261
BsmI GAATGC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 66, 316
BspACI CCGC 2 cut(s) 81, 276
BspFNI CGCG 1 cut(s) 83
BspMAI CTGCAG 2 cut(s) 184, 232
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 24, 111
BsrI ACTGG 1 cut(s) 300
BssMI GATC 2 cut(s) 66, 316
Bst6I CTCTTC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 9, 327
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 2 cut(s) 69, 319
BstMBI GATC 2 cut(s) 66, 316
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSFI CTRYAG 2 cut(s) 180, 228
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 17, 194
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 150, 307
BveI ACCTGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 169
CviJI RGCY 4 cut(s) 8, 185, 269, 331
CviKI_1 RGCY 4 cut(s) 8, 185, 269, 331
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 9, 327
DpnI GATC 2 cut(s) 68, 318
DpnII GATC 2 cut(s) 66, 316
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 258
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 48, 170, 308
FatI CATG 1 cut(s) 168
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 6, 183
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 6, 183
GluI GCNGC 2 cut(s) 6, 183
HapII CCGG 1 cut(s) 128
Hin1II CATG 1 cut(s) 172
HinfI GANTC 3 cut(s) 28, 233, 325
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 64, 314
HpyAV CCTTC 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 116, 182, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 9, 327
Hsp92II CATG 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 2 cut(s) 66, 316
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 141, 286, 313, 327
Lsp1109I GCAGC 2 cut(s) 17, 194
LweI GCATC 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 29, 71
MalI GATC 2 cut(s) 68, 318
MboI GATC 2 cut(s) 66, 316
MboII GAAGA 4 cut(s) 34, 37, 251, 307
MflI RGATCY 1 cut(s) 316
MluCI AATT 1 cut(s) 123
MlyI GAGTC 3 cut(s) 37, 227, 319
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 7 cut(s) 129, 132, 196, 220, 235, 241, 259
MspA1I CMGCKG 2 cut(s) 8, 331
MspI CCGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 292
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 66, 316
NlaIII CATG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 29
PctI GAATGC 1 cut(s) 292
Pfl23II CGTACG 1 cut(s) 261
PkrI GCNGC 2 cut(s) 7, 184
PleI GAGTC 3 cut(s) 36, 227, 319
PpsI GAGTC 3 cut(s) 36, 227, 319
PspLI CGTACG 1 cut(s) 261
PstI CTGCAG 2 cut(s) 184, 232
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 2 cut(s) 8, 331
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SatI GCNGC 2 cut(s) 6, 183
Sau3AI GATC 2 cut(s) 66, 316
SchI GAGTC 3 cut(s) 37, 227, 319
SetI ASST 5 cut(s) 10, 143, 252, 275, 333
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 2 cut(s) 180, 228
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 123
SsiI CCGC 2 cut(s) 81, 276
TaqI TCGA 3 cut(s) 101, 162, 323
TasI AATT 1 cut(s) 123
TscAI CASTG 2 cut(s) 150, 307
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 5, 182
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 2 cut(s) 150, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.