Prupe.1G487200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000500
Physical Location & Seq
Reverse (-)
40591401 .. 40591911
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G487200.1

Sequence Viewer

Length: 291 bp
ATGGTGGCCAAGCTGCAGAACACAGGTGAGGGAGTGAAGGTGATCGCAGACAAGCCCAAGGCAGAGGCTAATTATTGGTTCAAACCCAAGAAGGGGAGTGTTTTCCCAGCAAAGAGAAAGTTGGTGAAGACAATGGTTTTTGATTCCATAGTGAAATGGGTTGCCTCTGTTTTCTACTCTGCCCTTCCTCCACCTCCTCCCTCTGGAGCCCCAGCCAACCAACCCAACATCGACAAAGTACCAAATTCCAAGAAATGCAAGCAGATATCCCCAGTTTCCGGTGGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.35

Weight (kDa)

10.06

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 4 cut(s) 92, 93, 203, 278
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 38, 52, 136
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 93, 203, 278
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 4 cut(s) 92, 93, 203, 278
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 186
BseYI CCCAGC 2 cut(s) 106, 211
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 4 cut(s) 92, 93, 203, 278
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 42
BspANI GGCC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 239
CviJI RGCY 6 cut(s) 8, 13, 55, 68, 209, 215
CviKI_1 RGCY 6 cut(s) 8, 13, 55, 68, 209, 215
CviQI GTAC 1 cut(s) 239
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 267
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 57
FaiI YATR 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 14
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 2 cut(s) 110, 215
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 279
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 279
HphI GGTGA 3 cut(s) 38, 52, 136
Hpy188III TCNNGA 1 cut(s) 204
HpyAV CCTTC 3 cut(s) 31, 85, 194
HpyCH4V TGCA 2 cut(s) 16, 258
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 9, 120, 189, 225, 285
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 2 cut(s) 70, 244
MluNI TGGCCA 1 cut(s) 8
MnlI CCTC 7 cut(s) 22, 58, 175, 198, 204, 207, 211
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 279
NdeII GATC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 15
PspFI CCCAGC 2 cut(s) 106, 211
PspN4I GGNNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 18
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 211
SetI ASST 4 cut(s) 15, 28, 42, 196
SfcI CTRYAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 70, 244
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 70, 244
TfiI GAWTC 1 cut(s) 143
TseI GCWGC 1 cut(s) 13
XapI RAATTY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.