pycom05g16540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000500
Physical Location & Seq
Reverse (-)
19810543 .. 19810827
285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16540.1

Sequence Viewer

Length: 285 bp
ATGGCAATGAAGAAGAAAGCTTCAGATGCAGCAGAGGAGGAGCACATGATGGAGTTGAAGTTGAAGACCCCATTTGAAGAACAAATGCTGGAACTCCACAACAAGGCTGAGCCATGGATTTTCAAGCCAAAAGCTGGAACTGTTTTCCCTGTGAAGAAGAGGTTAGTGAAAAGAATGATGCTTGATCAAATTGTCAAATGTTTTTGCTCTGGTTCAGACTCAAATACCAAGAAGATCATCAGCAACCATGTTTATCCAAACTCACCATTGCATATATGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.83

Weight (kDa)

9.22

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 103, 134
AgsI TTSAA 4 cut(s) 58, 64, 77, 124
AluBI AGCT 2 cut(s) 20, 134
AluI AGCT 2 cut(s) 20, 134
Alw21I GWGCWC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 43
BclI TGATCA 1 cut(s) 184
BisI GCNGC 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 31
BmsI GCATC 2 cut(s) 16, 168
BpiI GAAGAC 1 cut(s) 71
Bpu1102I GCTNAGC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 134
Bse3DI GCAATG 2 cut(s) 12, 266
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 103, 134
BseMI GCAATG 2 cut(s) 12, 266
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 2 cut(s) 50, 53
BseXI GCAGC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 103, 134
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 184, 234
Bsp1720I GCTNAGC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 12, 266
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 184, 234
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 113
BstKTI GATC 2 cut(s) 187, 237
BstMBI GATC 2 cut(s) 184, 234
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 113
CviAII CATG 3 cut(s) 46, 114, 248
CviJI RGCY 5 cut(s) 20, 107, 112, 127, 134
CviKI_1 RGCY 5 cut(s) 20, 107, 112, 127, 134
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 186, 236
DpnII GATC 2 cut(s) 184, 234
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 49, 117, 251
FaiI YATR 7 cut(s) 47, 115, 249, 273, 275, 277, 283
FatI CATG 3 cut(s) 45, 113, 247
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
Hin1II CATG 3 cut(s) 49, 117, 251
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 25, 217
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 29, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 49, 117, 251
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 234
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 74, 120, 162, 195
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 16, 168
MalI GATC 2 cut(s) 186, 236
MboI GATC 2 cut(s) 184, 234
MboII GAAGA 7 cut(s) 22, 25, 76, 89, 166, 169, 244
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 3 cut(s) 28, 31, 153
MslI CAYNNNNRTG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 113
NdeII GATC 2 cut(s) 184, 234
NlaIII CATG 3 cut(s) 49, 117, 251
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 184, 234
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 45
SetI ASST 3 cut(s) 22, 136, 164
SfaNI GCATC 2 cut(s) 16, 168
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 1 cut(s) 189
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 142
TasI AATT 1 cut(s) 189
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.