RLG00000011635

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11221135 .. 11221721
587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011635

Sequence Viewer

Length: 498 bp
ATGAATATACTCGATCGTATACTTATTGACACTATCAACCTGGGTAATAGCCCACTTGTTAATTTTACTGGACACGTGGCACCTAGTGCTTCTCATGAGGAGCAAGTTTTCGCTCTGACCGGCTATTCCAATGCAGAGACAGGCACAGTCACAGAGGCAGAGTCTCAGAGCTTAGCTAGGGAGAGATCGATGGTGTCGAAGCTTCAGAACTGTGTGTATGCGAAAGCTGTGTGGACCGTGACAGATCAGCGGCCGCTGGTGGAGGCGGCGGAGCCCAGCAACAAGAAGAAAGGTGGTAGTCTCAGTTTGGTGCCGGCAAAGAGAAGGCTGGTCAAGACCATGGTGTTTCTTTCCATTGTTGAGTTCATTGGCTCCGTTTTCTGTGCCTCTGGAGACACCGAAGCCAACTCCACCAATTCCAAGTCCAAAATCCCAAGTGCCAGCAAATCCAAGCAGATTATCCCAGAGCCGGACGGTTTGACTTCTCAGAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.71

Weight (kDa)

8.56

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 79, 310
AccI GTMKAC 1 cut(s) 19
AciI CCGC 4 cut(s) 250, 254, 266, 269
AcoI YGGCCR 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 188
AcvI CACGTG 1 cut(s) 76
AdeI CACNNNGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 73
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 4 cut(s) 171, 176, 202, 227
AluI AGCT 4 cut(s) 171, 176, 202, 227
Alw26I GTCTC 4 cut(s) 131, 168, 305, 387
AoxI GGCC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 234
AvaII GGWCC 1 cut(s) 234
BanI GGYRCC 2 cut(s) 79, 310
BanII GRGCYC 1 cut(s) 276
BbrPI CACGTG 1 cut(s) 76
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 4 cut(s) 131, 168, 305, 387
BfaI CTAG 2 cut(s) 84, 177
BisI GCNGC 3 cut(s) 251, 254, 267
BlpI GCTNAGC 1 cut(s) 172
BlsI GCNGC 3 cut(s) 252, 255, 268
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 4 cut(s) 81, 273, 312, 373
BmrFI CCNGG 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 40, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 2 cut(s) 119, 313
Bse1I ACTGG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 40, 339
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 179, 316
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 113
BseX3I CGGCCG 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 275
Bsh1285I CGRYCG 2 cut(s) 16, 254
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 2 cut(s) 79, 310
BshVI ATCGAT 1 cut(s) 188
BsiEI CGRYCG 2 cut(s) 16, 254
BsiSI CCGG 3 cut(s) 120, 314, 470
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 4 cut(s) 131, 168, 305, 387
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 13, 185, 244
Bsp1720I GCTNAGC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 4 cut(s) 250, 254, 266, 269
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 178, 315
BspDI ATCGAT 1 cut(s) 188
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 4 cut(s) 81, 273, 312, 373
BspT107I GGYRCC 2 cut(s) 79, 310
BsrFI RCCGGY 2 cut(s) 119, 313
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 2 cut(s) 119, 313
BssECI CCNNGG 2 cut(s) 40, 339
BssMI GATC 3 cut(s) 13, 185, 244
BssNAI GTATAC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 4 cut(s) 148, 212, 238, 476
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 315, 442
BstDEI CTNAG 4 cut(s) 165, 172, 302, 486
BstDSI CCRYGG 1 cut(s) 339
BstKTI GATC 3 cut(s) 16, 188, 247
BstMAI GTCTC 4 cut(s) 131, 168, 305, 387
BstMBI GATC 3 cut(s) 13, 185, 244
BstMCI CGRYCG 2 cut(s) 16, 254
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstZ17I GTATAC 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 188
BsuRI GGCC 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 315, 442
CciI TCATGA 1 cut(s) 94
CciNI GCGGCCGC 1 cut(s) 251
Cfr10I RCCGGY 2 cut(s) 119, 313
Cfr13I GGNCC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 188
CviAII CATG 2 cut(s) 95, 340
DdeI CTNAG 4 cut(s) 165, 172, 302, 486
DpnI GATC 3 cut(s) 15, 187, 246
DpnII GATC 3 cut(s) 13, 185, 244
DraIII CACNNNGTG 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 251
EagI CGGCCG 1 cut(s) 251
EciI GGCGGA 1 cut(s) 284
EclXI CGGCCG 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 234
Eco52I CGGCCG 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 188
Eco72I CACGTG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 98, 343
FaiI YATR 6 cut(s) 8, 20, 96, 219, 341, 496
FatI CATG 2 cut(s) 94, 339
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 251, 254, 267
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 251, 254, 267
FspBI CTAG 2 cut(s) 84, 177
GluI GCNGC 3 cut(s) 251, 254, 267
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 253
HapII CCGG 3 cut(s) 120, 314, 470
Hin1II CATG 2 cut(s) 98, 343
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 161
HpaII CCGG 3 cut(s) 120, 314, 470
Hpy166II GTNNAC 2 cut(s) 20, 234
Hpy188I TCNGA 4 cut(s) 117, 168, 207, 489
Hpy188III TCNNGA 3 cut(s) 95, 334, 390
Hpy8I GTNNAC 2 cut(s) 20, 234
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 4 cut(s) 148, 212, 238, 476
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 4 cut(s) 165, 172, 302, 486
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 98, 343
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 13, 185, 244
LmnI GCTCC 3 cut(s) 100, 271, 377
MaeI CTAG 2 cut(s) 84, 177
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 148, 238
MalI GATC 3 cut(s) 15, 187, 246
MboI GATC 3 cut(s) 13, 185, 244
MboII GAAGA 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 61, 415
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 91, 148, 256, 397
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 2 cut(s) 250, 256
MspI CCGG 3 cut(s) 120, 314, 470
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 86
NaeI GCCGGC 1 cut(s) 315
NcoI CCATGG 1 cut(s) 339
NdeII GATC 3 cut(s) 13, 185, 244
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 2 cut(s) 98, 343
NlaIV GGNNCC 4 cut(s) 81, 273, 312, 373
NmuCI GTSAC 2 cut(s) 148, 238
NotI GCGGCCGC 1 cut(s) 251
PagI TCATGA 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 252, 255, 268
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 1 cut(s) 169
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 39
PspCI CACGTG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 4 cut(s) 81, 273, 312, 373
PspPI GGNCC 1 cut(s) 234
PvuI CGATCG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 3 cut(s) 251, 254, 267
Sau3AI GATC 3 cut(s) 13, 185, 244
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 276
SetI ASST 8 cut(s) 42, 78, 85, 173, 178, 204, 229, 295
SinI GGWCC 1 cut(s) 234
Sse9I AATT 2 cut(s) 61, 415
SsiI CCGC 4 cut(s) 250, 254, 266, 269
SspMI CTAG 2 cut(s) 84, 177
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 148, 212, 238, 476
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 12, 188, 197
TasI AATT 2 cut(s) 61, 415
TauI GCSGC 3 cut(s) 253, 256, 269
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 2 cut(s) 148, 238
Tsp45I GTSAC 2 cut(s) 148, 238
TspDTI ATGAA 2 cut(s) 17, 355
TspGWI ACGGA 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 2 cut(s) 84, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.