Rh6DG380200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000500
Physical Location & Seq
Forward (+)
57430654 .. 57437731
7078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG380200.1

Sequence Viewer

Length: 354 bp
ATGCCGGACAAGGCAATGAGGAACAACTCATGCAGTAACTATAAGGGGGTTGCTGTATCGGGCTCTAAACCAATGGTTGCAACTGCTAGTGTCATACCAGCAAAAAGGAGCATTCTTGAGGATGGACTTTGGCCTCCATGGTTGGGAGTTTTAGATCGGGACTTTGGCTCCGATCTGCAGTGGAGGGCAGCAGCAGAAGTCCGTGGTGTTGACATTGGTGGTGGTACAACTGCACTTAGGGCTGAATTTCGGGTTCTGACTGATTGGGAATGTGCGCGCCAAGGAGCCTCGCTGGAGGCCAGTGGGACTGCTTGGGAATGTCCGTGGTACAACTGCTTGGGGGTCGTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.62

Weight (kDa)

5.35

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 277
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 226, 329
AfiI CCNNNNNNNGG 1 cut(s) 143
AoxI GGCC 2 cut(s) 131, 297
ApeKI GCWGC 2 cut(s) 188, 191
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 2 cut(s) 277, 279
BanII GRGCYC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 200, 203
BccI CCATC 1 cut(s) 116
BfaI CTAG 2 cut(s) 87, 352
BfmI CTRYAG 1 cut(s) 176
BisI GCNGC 2 cut(s) 189, 192
BlsI GCNGC 2 cut(s) 190, 193
BmiI GGNNCC 2 cut(s) 169, 286
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 4 cut(s) 137, 202, 280, 323
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 137, 202, 280, 323
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 300
BsePI GCGCGC 1 cut(s) 275
BseXI GCAGC 2 cut(s) 200, 203
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 133, 299
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 2 cut(s) 173, 319
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 173, 319
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 2 cut(s) 133, 299
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 154, 172
Bsp19I CCATGG 1 cut(s) 137
BspANI GGCC 2 cut(s) 133, 299
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 169, 286
BspMAI CTGCAG 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 137, 202, 280, 323
BssHII GCGCGC 1 cut(s) 275
BssMI GATC 2 cut(s) 154, 172
BssT1I CCWWGG 2 cut(s) 137, 280
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 3 cut(s) 137, 202, 323
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 277
BstHHI GCGC 2 cut(s) 277, 279
BstKTI GATC 2 cut(s) 157, 175
BstMBI GATC 2 cut(s) 154, 172
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 176
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 200, 203
BsuRI GGCC 2 cut(s) 133, 299
BtgI CCRYGG 3 cut(s) 137, 202, 323
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 185, 307
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 2 cut(s) 277, 279
Csp6I GTAC 2 cut(s) 225, 328
CviAII CATG 2 cut(s) 30, 138
CviJI RGCY 6 cut(s) 63, 133, 168, 242, 287, 299
CviKI_1 RGCY 6 cut(s) 63, 133, 168, 242, 287, 299
CviQI GTAC 2 cut(s) 225, 328
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 156, 174
DpnII GATC 2 cut(s) 154, 172
Eco130I CCWWGG 2 cut(s) 137, 280
Eco24I GRGCYC 1 cut(s) 65
EcoT14I CCWWGG 2 cut(s) 137, 280
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 137, 280
FaeI CATG 2 cut(s) 33, 141
FaiI YATR 4 cut(s) 31, 42, 95, 139
FaqI GGGAC 2 cut(s) 173, 319
FatI CATG 2 cut(s) 29, 137
Fnu4HI GCNGC 2 cut(s) 189, 192
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 189, 192
FspBI CTAG 2 cut(s) 87, 352
GlaI GCGC 2 cut(s) 276, 278
GluI GCNGC 2 cut(s) 189, 192
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 2 cut(s) 133, 299
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 277, 279
Hin1II CATG 2 cut(s) 33, 141
Hin6I GCGC 2 cut(s) 275, 277
HinP1I GCGC 2 cut(s) 275, 277
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 172, 258
Hpy188III TCNNGA 2 cut(s) 116, 158
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 350
HpyCH4V TGCA 4 cut(s) 33, 80, 178, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 2 cut(s) 33, 141
HspAI GCGC 2 cut(s) 275, 277
Kzo9I GATC 2 cut(s) 154, 172
LmnI GCTCC 3 cut(s) 108, 173, 284
LpnPI CCDG 4 cut(s) 18, 111, 278, 313
Lsp1109I GCAGC 2 cut(s) 200, 203
MaeI CTAG 2 cut(s) 87, 352
MaeIII GTNAC 1 cut(s) 35
MalI GATC 2 cut(s) 156, 174
MboI GATC 2 cut(s) 154, 172
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 1 cut(s) 245
MnlI CCTC 6 cut(s) 12, 112, 144, 177, 289, 298
MspI CCGG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 111
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 137
NdeII GATC 2 cut(s) 154, 172
NlaIII CATG 2 cut(s) 33, 141
NlaIV GGNNCC 2 cut(s) 169, 286
PauI GCGCGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 190, 193
PspN4I GGNNCC 2 cut(s) 169, 286
PstI CTGCAG 1 cut(s) 180
PteI GCGCGC 1 cut(s) 275
RsaI GTAC 2 cut(s) 226, 329
RsaNI GTAC 2 cut(s) 225, 328
SatI GCNGC 2 cut(s) 189, 192
Sau3AI GATC 2 cut(s) 154, 172
SduI GDGCHC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 87, 352
StyI CCWWGG 2 cut(s) 137, 280
TasI AATT 1 cut(s) 245
TscAI CASTG 2 cut(s) 185, 307
TseI GCWGC 2 cut(s) 188, 191
TspGWI ACGGA 2 cut(s) 191, 312
TspRI CASTG 2 cut(s) 185, 307
XapI RAATTY 1 cut(s) 245
XspI CTAG 2 cut(s) 87, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.