Rh6DG379200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000500
Physical Location & Seq
Reverse (-)
57323158 .. 57323866
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG379200.1

Sequence Viewer

Length: 336 bp
ATGGCGTCGGAGCTTCAGAAAAATGCCGGAGCGGAAATTGCGACAGATCTGCCACCGCCGCCGGTGGAAAAGCCCAATATGGAACCTAATAGCTCTCTCAAACCCACCAAGATCAGGAAAGGTGGTAGTCTGTTGCCGGCGAAGAGAAGGTTAGTCAAGACCATGGCATTTCTTTCCGTTGTTCAATTCTTTAGCTCAATCTTCTGTGCCCCCGAACCCCGTTCAGCCCGTTCCACGCCACCCGAAATAATCCCACACGCCAAGATTTCCAAGCAGATTTTCCCAGAGCGGAGCCAGGATGAGGACTCCCAAAGTCCCAATGCGTACTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.19

Weight (kDa)

9.46

Isoelectric Point (pI)

82.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 32, 289
AciI CCGC 4 cut(s) 32, 56, 59, 289
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 114, 301
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 13, 93, 195
AluI AGCT 3 cut(s) 13, 93, 195
BaeGI GKGCMC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 296
BglII AGATCT 1 cut(s) 46
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 84, 293
BmrFI CCNGG 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 301
Bse118I RCCGGY 2 cut(s) 61, 136
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 114, 301
BseSI GKGCMC 1 cut(s) 211
BsiSI CCGG 3 cut(s) 27, 62, 137
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 114, 301
BsmFI GGGAC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 46, 111
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 4 cut(s) 32, 56, 59, 289
BspLI GGNNCC 2 cut(s) 84, 293
BsrBI CCGCTC 2 cut(s) 32, 289
BsrFI RCCGGY 2 cut(s) 61, 136
BssAI RCCGGY 2 cut(s) 61, 136
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 46, 111
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 49, 114
BstMBI GATC 2 cut(s) 46, 111
BstMWI GCNNNNNNNGC 2 cut(s) 38, 58
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 2 cut(s) 61, 136
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 163
CviJI RGCY 6 cut(s) 13, 73, 93, 195, 227, 294
CviKI_1 RGCY 6 cut(s) 13, 73, 93, 195, 227, 294
CviQI GTAC 1 cut(s) 325
DpnI GATC 2 cut(s) 48, 113
DpnII GATC 2 cut(s) 46, 111
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 80, 164
FaqI GGGAC 1 cut(s) 300
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 3 cut(s) 27, 62, 137
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 166
HinfI GANTC 1 cut(s) 305
HpaII CCGG 3 cut(s) 27, 62, 137
Hpy188I TCNGA 2 cut(s) 10, 18
Hpy188III TCNNGA 2 cut(s) 115, 157
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 58
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 166
KroI GCCGGC 1 cut(s) 136
KroNI GCCGGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 46, 111
LmnI GCTCC 3 cut(s) 10, 29, 291
LpnPI CCDG 7 cut(s) 40, 75, 100, 150, 281, 297, 308
MalI GATC 2 cut(s) 48, 113
MbiI CCGCTC 2 cut(s) 32, 289
MboI GATC 2 cut(s) 46, 111
MboII GAAGA 2 cut(s) 154, 193
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 36, 185
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 1 cut(s) 295
MroNI GCCGGC 1 cut(s) 136
MspI CCGG 3 cut(s) 27, 62, 137
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 38, 58
NaeI GCCGGC 1 cut(s) 138
NcoI CCATGG 1 cut(s) 162
NdeII GATC 2 cut(s) 46, 111
NgoMIV GCCGGC 1 cut(s) 136
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 84, 293
PdiI GCCGGC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 84, 293
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 46, 111
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 211
SetI ASST 6 cut(s) 15, 88, 95, 124, 152, 197
SgrAI CRCCGGYG 1 cut(s) 61
Sse9I AATT 2 cut(s) 36, 185
SsiI CCGC 4 cut(s) 32, 56, 59, 289
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 162
TasI AATT 2 cut(s) 36, 185
TauI GCSGC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.