FvH4_2g28070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22133208 .. 22133838
631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28070.t1

Sequence Viewer

Length: 360 bp
ATGGTGAAGGAGCAGAACAACAAGCCAGGAAGCGGAGCTGTCCGTGCTGAGAAGGACGCCGCCGCCACCGTTTTACCGGCCAAGGAAAGGATGTTGGTGAAGACCAGGGCTTTTAAGTCGATTGTGCGCTTCTCTGCGTCTGTTTTTTGCTGTTCTTCTTCTGTAGGAGGAGGAGGAGGAGGAAGCGGCGGCCGAGGAGCTGTCTGTGATGAGCCAGAGCCACTGCCGGAGCCCAATCCGAAGAAGAAGGATGACGCGGCCGTCCAGTTTCCGCCGAAGAAGAAGAGGAAGATGGTGAAGACCATGGGGCGCTTCTTTGCCTCTATTTTCTGCTCGTCTTCCTCTTCCGGAGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.43

Weight (kDa)

9.92

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 347
AciI CCGC 7 cut(s) 33, 60, 63, 186, 189, 257, 272
AcoI YGGCCR 3 cut(s) 78, 190, 258
AcyI GRCGYC 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 32, 87
AjnI CCWGG 2 cut(s) 25, 104
AluBI AGCT 2 cut(s) 38, 200
AluI AGCT 2 cut(s) 38, 200
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 3 cut(s) 78, 190, 258
AspLEI GCGC 2 cut(s) 129, 312
AsuHPI GGTGA 3 cut(s) 16, 109, 307
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 3 cut(s) 107, 305, 330
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 27, 106
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 313
BisI GCNGC 5 cut(s) 60, 63, 187, 190, 258
BlsI GCNGC 5 cut(s) 61, 64, 188, 191, 259
Bme1390I CCNGG 2 cut(s) 27, 106
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 27, 106
BpiI GAAGAC 3 cut(s) 107, 305, 330
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 4 cut(s) 81, 105, 193, 303
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 87
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 2 cut(s) 27, 106
BseDI CCNNGG 4 cut(s) 81, 105, 193, 303
BseGI GGATG 2 cut(s) 96, 256
BseLI CCNNNNNNNGG 2 cut(s) 32, 87
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 5 cut(s) 183, 186, 189, 192, 210
BseX3I CGGCCG 2 cut(s) 190, 258
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 193, 261
BshFI GGCC 3 cut(s) 80, 192, 260
BsiEI CGRYCG 2 cut(s) 193, 261
BsiSI CCGG 3 cut(s) 77, 227, 348
BslI CCNNNNNNNGG 2 cut(s) 32, 87
BsnI GGCC 3 cut(s) 80, 192, 260
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 7 cut(s) 33, 60, 63, 186, 189, 257, 272
BspANI GGCC 3 cut(s) 80, 192, 260
BspCNI CTCAG 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 347
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 4 cut(s) 81, 105, 193, 303
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 81, 303
Bst2UI CCWGG 2 cut(s) 27, 106
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 2 cut(s) 278, 349
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 96, 256
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 2 cut(s) 129, 312
BstMCI CGRYCG 2 cut(s) 193, 261
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 27, 106
BstSCI CCNGG 2 cut(s) 25, 104
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 257
BstV2I GAAGAC 3 cut(s) 107, 305, 330
BstZI CGGCCG 2 cut(s) 190, 258
BsuRI GGCC 3 cut(s) 80, 192, 260
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 96, 256
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 2 cut(s) 129, 312
Cfr10I RCCGGY 1 cut(s) 76
CseI GACGC 3 cut(s) 65, 126, 263
CviAII CATG 1 cut(s) 304
DdeI CTNAG 1 cut(s) 48
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 3 cut(s) 78, 190, 258
EagI CGGCCG 2 cut(s) 190, 258
Eam1104I CTCTTC 2 cut(s) 278, 349
EarI CTCTTC 2 cut(s) 278, 349
EciI GGCGGA 1 cut(s) 261
EclXI CGGCCG 2 cut(s) 190, 258
Eco130I CCWWGG 2 cut(s) 81, 303
Eco24I GRGCYC 1 cut(s) 234
Eco52I CGGCCG 2 cut(s) 190, 258
EcoRII CCWGG 2 cut(s) 25, 104
EcoT14I CCWWGG 2 cut(s) 81, 303
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 81, 303
FaeI CATG 1 cut(s) 307
FaiI YATR 1 cut(s) 305
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 60, 63, 187, 190, 258
FokI GGATG 2 cut(s) 103, 263
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 60, 63, 187, 190, 258
GlaI GCGC 2 cut(s) 128, 311
GluI GCNGC 5 cut(s) 60, 63, 187, 190, 258
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 3 cut(s) 80, 192, 260
HapII CCGG 3 cut(s) 77, 227, 348
HgaI GACGC 3 cut(s) 65, 126, 263
HhaI GCGC 2 cut(s) 129, 312
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 2 cut(s) 127, 310
HinP1I GCGC 2 cut(s) 127, 310
HpaII CCGG 3 cut(s) 77, 227, 348
HphI GGTGA 3 cut(s) 16, 109, 307
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 46, 241
HpyCH4III ACNGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 2 cut(s) 127, 310
Kpn2I TCCGGA 1 cut(s) 347
LmnI GCTCC 4 cut(s) 10, 35, 197, 229
LpnPI CCDG 8 cut(s) 12, 39, 90, 91, 118, 228, 240, 278
MhlI GDGCHC 1 cut(s) 234
MroI TCCGGA 1 cut(s) 347
MseI TTAA 1 cut(s) 114
MspI CCGG 3 cut(s) 77, 227, 348
MspR9I CCNGG 2 cut(s) 27, 106
MvaI CCWGG 2 cut(s) 27, 106
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 44
NcoI CCATGG 1 cut(s) 303
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 231
NmeAIII GCCGAG 1 cut(s) 218
PkrI GCNGC 5 cut(s) 61, 64, 188, 191, 259
Psp6I CCWGG 2 cut(s) 25, 104
PspGI CCWGG 2 cut(s) 25, 104
PspN4I GGNNCC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 5 cut(s) 60, 63, 187, 190, 258
ScrFI CCNGG 2 cut(s) 27, 106
SduI GDGCHC 1 cut(s) 234
SetI ASST 2 cut(s) 40, 202
SfcI CTRYAG 1 cut(s) 162
SsiI CCGC 7 cut(s) 33, 60, 63, 186, 189, 257, 272
StyD4I CCNGG 2 cut(s) 25, 104
StyI CCWWGG 2 cut(s) 81, 303
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 119
TauI GCSGC 5 cut(s) 62, 65, 189, 192, 260
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.