FvH4_2g28150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22169269 .. 22170174
906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28150.t1

Sequence Viewer

Length: 273 bp
ATGGTGGTGAAGTTGCAGAACAACGACCGAGGAGATCAAGCTGTCTGGGACGAGAGGGAGTCACATCTGGCCGCCAAGTCCAAGCTTATGCCAAAGAAGGAGGGCAGTGTGTTTCCAGCGAAGAGGAAGTTGGTGAACACCACGGCTTTCACTTCCATTCTGCACTTCGTTGTCTCTCCCTGTTCTTCTGCTTCTGCTAGAGGTGAAGCCGCCAAAACCAAATCCCCAAATGGCAAGCAATTCAAGCAGATAGTCCCATATCCCAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

10.07

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 210
AcoI YGGCCR 1 cut(s) 69
AgsI TTSAA 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 41, 85
AluI AGCT 2 cut(s) 41, 85
Alw26I GTCTC 1 cut(s) 178
AoxI GGCC 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 19, 145, 215
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 72, 210
BlsI GCNGC 2 cut(s) 73, 211
BsaJI CCNNGG 2 cut(s) 28, 141
BseDI CCNNGG 2 cut(s) 28, 141
BseRI GAGGAG 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 62, 239
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 62, 239
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 2 cut(s) 72, 210
BspANI GGCC 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 28, 141
BssMI GATC 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 141
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 34
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 236
CviAII CATG 1 cut(s) 270
CviJI RGCY 5 cut(s) 41, 71, 85, 146, 209
CviKI_1 RGCY 5 cut(s) 41, 71, 85, 146, 209
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
FaeI CATG 1 cut(s) 273
FaiI YATR 3 cut(s) 89, 259, 271
FaqI GGGAC 2 cut(s) 62, 239
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 72, 210
Fsp4HI GCNGC 2 cut(s) 72, 210
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 72, 210
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 59
HphI GGTGA 3 cut(s) 19, 145, 215
Hpy166II GTNNAC 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 16, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 31, 53, 129, 193
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 60
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 133, 177
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 23, 48, 94, 117, 194
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 60
PkrI GCNGC 2 cut(s) 73, 211
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
SatI GCNGC 2 cut(s) 72, 210
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 68
SetI ASST 3 cut(s) 43, 87, 205
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 72, 210
SspMI CTAG 1 cut(s) 198
TaqII GACCGA 1 cut(s) 42
TasI AATT 1 cut(s) 239
TauI GCSGC 2 cut(s) 74, 212
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 60
TspRI CASTG 1 cut(s) 112
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.