Rh6CG393300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000500
Physical Location & Seq
Forward (+)
58064714 .. 58066229
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG393300.1

Sequence Viewer

Length: 423 bp
ATGCTGCAGATGAATACAGGTACAACTAGAAAGGATGGAATTATCTGGGCCGAACCCAGGACCATCAAGAAGGCTACCGGTAGTGTTTTCCCGGCGAAGAGAAGGTTGGTGAAGACCATGGTTTTTGCTTCCGTTTTGCACTTCTTCGCCTCTATTTTATGTTCCTCTGGAGAAGGTGGTGGGAGGAAACGAGAAATCCCAACTGCCAAACAATTCAAGCAGAACCCTAGCTACAAACTATATATTAAGTTACCAACAAGGAAGCTTCCCAAAATCCCTCGACCATTTTCAGCCACATTATACAGTCACTCCTCTGTTCTTATTCATCTAGTAGCGGCTCTCCGACAACTTTTTGATGCAATGGGAACACCTTTAGCATGGGACCTTACTCCTAAGTTTAGTGCTTATTTCGGTCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.74

Weight (kDa)

10.51

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 2 cut(s) 231, 265
AluI AGCT 2 cut(s) 231, 265
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 48, 60, 382
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 121
AvaII GGWCC 2 cut(s) 60, 382
BbsI GAAGAC 1 cut(s) 119
BccI CCATC 2 cut(s) 29, 71
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 3 cut(s) 27, 228, 329
BfmI CTRYAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 5, 336
BlsI GCNGC 2 cut(s) 6, 337
Bme1390I CCNGG 2 cut(s) 58, 92
Bme18I GGWCC 2 cut(s) 60, 382
BmgT120I GGNCC 3 cut(s) 48, 60, 382
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 58, 92
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 56, 117
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 56, 117
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 301
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 77
BsiSI CCGG 2 cut(s) 78, 92
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 50
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 383
BspMAI CTGCAG 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 56, 117
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 40
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 56, 90
BstSFI CTRYAG 1 cut(s) 5
BstV2I GAAGAC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 48, 60, 382
Csp6I GTAC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 2 cut(s) 118, 378
CviJI RGCY 6 cut(s) 50, 74, 231, 265, 293, 338
CviKI_1 RGCY 6 cut(s) 50, 74, 231, 265, 293, 338
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 60, 382
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 121, 381
FaiI YATR 6 cut(s) 119, 160, 241, 243, 301, 379
FaqI GGGAC 1 cut(s) 395
FatI CATG 2 cut(s) 117, 377
Fnu4HI GCNGC 2 cut(s) 5, 336
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 5, 336
FspBI CTAG 3 cut(s) 27, 228, 329
GluI GCNGC 2 cut(s) 5, 336
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 78, 92
Hin1II CATG 2 cut(s) 121, 381
HindIII AAGCTT 1 cut(s) 263
HpaII CCGG 2 cut(s) 78, 92
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 67, 168
HpyAV CCTTC 3 cut(s) 64, 96, 167
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 7, 139, 359
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 121, 381
LpnPI CCDG 7 cut(s) 3, 31, 43, 70, 91, 105, 153
LweI GCATC 1 cut(s) 346
MaeI CTAG 3 cut(s) 27, 228, 329
MaeIII GTNAC 3 cut(s) 249, 305, 413
MboII GAAGA 3 cut(s) 109, 124, 136
MluCI AATT 2 cut(s) 39, 212
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 160, 175, 177, 288, 322
MseI TTAA 1 cut(s) 246
MspI CCGG 2 cut(s) 78, 92
MspR9I CCNGG 2 cut(s) 58, 92
MvaI CCWGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 92
NcoI CCATGG 1 cut(s) 117
NlaIII CATG 2 cut(s) 121, 381
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 2 cut(s) 305, 413
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 2 cut(s) 6, 337
PpuMI RGGWCCY 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 3 cut(s) 48, 60, 382
PspPPI RGGWCCY 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 215, 247
PstI CTGCAG 1 cut(s) 9
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 5, 336
Sau96I GGNCC 3 cut(s) 48, 60, 382
ScrFI CCNGG 2 cut(s) 58, 92
SetI ASST 7 cut(s) 22, 107, 178, 233, 267, 373, 387
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 5
SinI GGWCC 2 cut(s) 60, 382
Sse9I AATT 2 cut(s) 39, 212
SsiI CCGC 1 cut(s) 335
SspMI CTAG 3 cut(s) 27, 228, 329
StyD4I CCNGG 2 cut(s) 56, 90
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 280
TaqII GACCGA 1 cut(s) 401
TasI AATT 2 cut(s) 39, 212
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 2 cut(s) 305, 413
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 305, 413
TspDTI ATGAA 2 cut(s) 26, 314
TspGWI ACGGA 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 60, 382
XspI CTAG 3 cut(s) 27, 228, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.