RLG00000011644

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11369957 .. 11371171
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011644

Sequence Viewer

Length: 405 bp
ATGAGAGGGAGAAAGAGCGGCAGAAACGATGGTGAAGGCGCAAAACAAGCCAGGAAGCGGAACAGGATGAGGAGGAGGCGAGCTGTCTGGGCTGAGCCAGAGCCACTGCCGGAGATCAATCCCAAGAAGGACAATGCGGCCATTGTGTTTCAGGCGAAAAAGAAAACGATGTTGGTGAAGACCATGGCTTCGAAGTTCATGGGACACTTATTTGCCTCTATTTTCTGCTCTTCTCGTTCTTCGGGAGGAAAAGGAGGAGCTATGTTCTTCACAACCAGAAATCCCAATTGCGGGTACATATTCTATACGGCCTGTGCTTCATATTTGTTTGTTGCTTCGAACGTTTTGATTTCCAACCCGGAGACTCTTGTTCGTGGTGGAGTGTGTGACTGCCAGCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.89

Weight (kDa)

10.26

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 18
AciI CCGC 4 cut(s) 18, 58, 137, 291
AclI AACGTT 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 57, 290, 291
AjnI CCWGG 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 83, 260, 397
AluI AGCT 3 cut(s) 83, 260, 397
Alw26I GTCTC 1 cut(s) 356
AoxI GGCC 2 cut(s) 138, 309
ArsI GACNNNNNNTTYG 2 cut(s) 172, 204
AspLEI GCGC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 44, 187
AsuII TTCGAA 2 cut(s) 191, 338
BbsI GAAGAC 1 cut(s) 185
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 52
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 356
BisI GCNGC 2 cut(s) 19, 138
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 2 cut(s) 20, 139
Bme1390I CCNGG 2 cut(s) 52, 359
BmrFI CCNGG 2 cut(s) 52, 359
BpiI GAAGAC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 93
Bpu14I TTCGAA 2 cut(s) 191, 338
BpuMI CCSGG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 290, 291
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 57, 290, 291
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 3 cut(s) 85, 88, 270
BshFI GGCC 2 cut(s) 140, 311
BsiSI CCGG 2 cut(s) 110, 359
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 3 cut(s) 57, 290, 291
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 2 cut(s) 140, 311
Bsp119I TTCGAA 2 cut(s) 191, 338
Bsp143I GATC 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 4 cut(s) 18, 58, 137, 291
BspANI GGCC 2 cut(s) 140, 311
BspCNI CTCAG 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 235
BspT104I TTCGAA 2 cut(s) 191, 338
BsrBI CCGCTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 235
BstBI TTCGAA 2 cut(s) 191, 338
BstC8I GCNNGC 2 cut(s) 81, 395
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 47, 89
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 50, 357
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 140, 311
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 81, 395
CfoI GCGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 184, 199
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 187, 202
FaiI YATR 6 cut(s) 185, 200, 263, 299, 306, 322
FaqI GGGAC 1 cut(s) 216
FatI CATG 2 cut(s) 183, 198
FauI CCCGC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 19, 138
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 19, 138
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 19, 138
HaeIII GGCC 2 cut(s) 140, 311
HapII CCGG 2 cut(s) 110, 359
HhaI GCGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 187, 202
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 1 cut(s) 364
HpaII CCGG 2 cut(s) 110, 359
HphI GGTGA 2 cut(s) 44, 187
Hpy188III TCNNGA 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 29, 121
HpyCH4IV ACGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 89
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 2 cut(s) 187, 202
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 114
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 257
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 386
MalI GATC 1 cut(s) 116
MbiI CCGCTC 1 cut(s) 18
MboI GATC 1 cut(s) 114
MboII GAAGA 4 cut(s) 190, 222, 231, 259
MfeI CAATTG 1 cut(s) 286
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 6 cut(s) 63, 66, 69, 226, 239, 248
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 2 cut(s) 110, 359
MspR9I CCNGG 2 cut(s) 52, 359
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 47, 89
NciI CCSGG 1 cut(s) 359
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 187, 202
NmuCI GTSAC 1 cut(s) 386
NspV TTCGAA 2 cut(s) 191, 338
PciSI GCTCTTC 1 cut(s) 235
PkrI GCNGC 2 cut(s) 20, 139
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 235
SatI GCNGC 2 cut(s) 19, 138
Sau3AI GATC 1 cut(s) 114
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 52, 359
SetI ASST 4 cut(s) 85, 262, 345, 399
SfuI TTCGAA 2 cut(s) 191, 338
Sse9I AATT 1 cut(s) 286
SsiI CCGC 4 cut(s) 18, 58, 137, 291
StyD4I CCNGG 2 cut(s) 50, 357
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 191, 338
TasI AATT 1 cut(s) 286
TauI GCSGC 2 cut(s) 21, 140
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 187, 309
TspRI CASTG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.