Rroxscaffold_2G00150260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000500
Physical Location & Seq
Forward (+)
87679796 .. 87683588
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150260.1

Sequence Viewer

Length: 723 bp
ATGAACCTAATCTCGGATTTTCCGAAGCTCTGCGTTTCTTTTCTTCTCGCTCTTCTTCTTGCTAAACCCGGATCGAGACAACCTTCTCTCGCTCAAGACTTCTTCTCTTTCTCATGCTTTGCGTCTCTTTTCTTCGGTCTTCTTCGTAAATTGCAAGCCTTCTTGCTCAACCCGGATCGAGACGACCTTCGCAGAAATTCACTTCATTCTGCAGCCGATTCGGTTGGAGCTTCAATTTGTTGCTGCTTCGGCGGGTACATATTCTATACGGCATGTGCTTCATATTTGTTTGTTGCTTCGAACGTTTTGATTTCCAACCCGAGACTCTTAATCGTGGTGGAGTGTGTGACTGCCATTTGGAATGATAACGCGGTGCTAGTTGCTTTGTCGGACAAGGGGTGGGTCTTAAGGCCGGGCTCTTGGGTTGGCTCTTCTCGGAGATTGGATGTGGTGCTCGGCTTGGTTATGTTTTCGATGCTCGAGGCGGCCGATGATGGGCACACCGGTTTTCGGTTCGAGTTAGGAGAGTGCGGACAAGACTTTTTTCGGGCGGCGGTAGAGGTGCGAGTTGTCCGCTCTGTTGCTAGCGTTAAGGTGGAGCTCCTCATTTTGATGGCGGTGATGGTGGTCGAAAGTGGTGCTTTTGATGGATCTACACGAAGGGTGGAGCGAGCTAGATTGGGCTTCATCGGGTCTCAACCTGTCCTTTGGGCCTTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.28

Weight (kDa)

7.53

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 576
AccII CGCG 1 cut(s) 371
AciI CCGC 8 cut(s) 252, 371, 485, 531, 551, 554, 574, 617
AclI AACGTT 1 cut(s) 303
AclWI GGATC 3 cut(s) 79, 183, 658
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 13, 495, 510
AflII CTTAAG 1 cut(s) 406
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 1 cut(s) 234
AluBI AGCT 4 cut(s) 28, 230, 601, 674
AluI AGCT 4 cut(s) 28, 230, 601, 674
Alw21I GWGCWC 2 cut(s) 456, 603
Alw26I GTCTC 5 cut(s) 70, 129, 174, 316, 699
AlwI GGATC 3 cut(s) 79, 183, 658
Ama87I CYCGRG 2 cut(s) 319, 479
AoxI GGCC 3 cut(s) 410, 486, 711
ApeKI GCWGC 2 cut(s) 212, 243
ApoI RAATTY 1 cut(s) 196
AsiGI ACCGGT 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 711
AsuC2I CCSGG 3 cut(s) 69, 173, 414
AsuHPI GGTGA 1 cut(s) 631
AsuII TTCGAA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 584
AvaI CYCGRG 2 cut(s) 319, 479
BaeGI GKGCMC 1 cut(s) 501
BanII GRGCYC 2 cut(s) 419, 603
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 456, 603
BbvI GCAGC 2 cut(s) 224, 230
BccI CCATC 4 cut(s) 488, 607, 616, 641
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 4 cut(s) 201, 235, 620, 654
BcnI CCSGG 3 cut(s) 69, 173, 414
BcoDI GTCTC 5 cut(s) 70, 129, 174, 316, 699
BfaI CTAG 3 cut(s) 377, 585, 675
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 213, 244, 486, 552
BlsI GCNGC 4 cut(s) 214, 245, 487, 553
Bme1390I CCNGG 3 cut(s) 69, 173, 414
BmeT110I CYCGRG 2 cut(s) 319, 479
BmgT120I GGNCC 1 cut(s) 711
BmrFI CCNGG 3 cut(s) 69, 173, 414
BmsI GCATC 1 cut(s) 465
BmtI GCTAGC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 3 cut(s) 69, 173, 414
BsaI GGTCTC 1 cut(s) 699
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 495, 510
Bse118I RCCGGY 1 cut(s) 503
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 3 cut(s) 13, 495, 510
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 1 cut(s) 501
BseX3I CGGCCG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 224, 230
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 489
BshFI GGCC 3 cut(s) 412, 488, 713
BshTI ACCGGT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 489
BsiHKAI GWGCWC 2 cut(s) 456, 603
BsiHKCI CYCGRG 2 cut(s) 319, 479
BsiSI CCGG 4 cut(s) 69, 173, 413, 504
BslI CCNNNNNNNGG 3 cut(s) 13, 495, 510
BsmAI GTCTC 5 cut(s) 70, 129, 174, 316, 699
BsmBI CGTCTC 2 cut(s) 129, 174
BsnI GGCC 3 cut(s) 412, 488, 713
Bso31I GGTCTC 1 cut(s) 699
BsoBI CYCGRG 2 cut(s) 319, 479
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 4 cut(s) 419, 456, 501, 603
Bsp143I GATC 3 cut(s) 71, 175, 650
BspACI CCGC 8 cut(s) 252, 371, 485, 531, 551, 554, 574, 617
BspANI GGCC 3 cut(s) 412, 488, 713
BspFNI CGCG 1 cut(s) 371
BspMAI CTGCAG 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 588
BspPI GGATC 3 cut(s) 79, 183, 658
BspQI GCTCTTC 2 cut(s) 57, 436
BspT104I TTCGAA 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 699
BsrBI CCGCTC 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 503
BssMI GATC 3 cut(s) 71, 175, 650
Bst6I CTCTTC 2 cut(s) 57, 436
BstAFI CTTAAG 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 156, 586, 672
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 371
BstKTI GATC 3 cut(s) 74, 178, 653
BstMAI GTCTC 5 cut(s) 70, 129, 174, 316, 699
BstMBI GATC 3 cut(s) 71, 175, 650
BstMCI CGRYCG 1 cut(s) 489
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 67, 171, 412
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 501
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 224, 230
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
BstZI CGGCCG 1 cut(s) 486
BsuRI GGCC 3 cut(s) 412, 488, 713
BtsCI GGATG 1 cut(s) 451
Cac8I GCNNGC 3 cut(s) 156, 586, 672
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 711
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 256
CspAI ACCGGT 1 cut(s) 503
CviAII CATG 2 cut(s) 114, 273
CviQI GTAC 1 cut(s) 256
DpnI GATC 3 cut(s) 73, 177, 652
DpnII GATC 3 cut(s) 71, 175, 650
EaeI YGGCCR 1 cut(s) 486
EagI CGGCCG 1 cut(s) 486
Eam1104I CTCTTC 2 cut(s) 57, 436
EarI CTCTTC 2 cut(s) 57, 436
Ecl136II GAGCTC 1 cut(s) 601
EclXI CGGCCG 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 419, 603
Eco31I GGTCTC 1 cut(s) 699
Eco52I CGGCCG 1 cut(s) 486
Eco53kI GAGCTC 1 cut(s) 601
Eco88I CYCGRG 2 cut(s) 319, 479
EcoICRI GAGCTC 1 cut(s) 601
EcoT38I GRGCYC 2 cut(s) 419, 603
Esp3I CGTCTC 2 cut(s) 129, 174
FaeI CATG 2 cut(s) 117, 276
FaiI YATR 6 cut(s) 115, 260, 267, 274, 283, 467
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FatI CATG 2 cut(s) 113, 272
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 4 cut(s) 213, 244, 486, 552
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 2 cut(s) 419, 603
Fsp4HI GCNGC 4 cut(s) 213, 244, 486, 552
FspBI CTAG 3 cut(s) 377, 585, 675
GluI GCNGC 4 cut(s) 213, 244, 486, 552
HaeIII GGCC 3 cut(s) 412, 488, 713
HapII CCGG 4 cut(s) 69, 173, 413, 504
HgaI GACGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 117, 276
HinfI GANTC 2 cut(s) 218, 324
HpaII CCGG 4 cut(s) 69, 173, 413, 504
HphI GGTGA 1 cut(s) 631
Hpy188I TCNGA 4 cut(s) 16, 24, 391, 438
Hpy188III TCNNGA 3 cut(s) 75, 95, 179
HpyAV CCTTC 4 cut(s) 93, 169, 197, 654
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 154, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 117, 276
Kzo9I GATC 3 cut(s) 71, 175, 650
LguI GCTCTTC 2 cut(s) 57, 436
LmnI GCTCC 4 cut(s) 227, 598, 606, 667
LpnPI CCDG 5 cut(s) 82, 186, 426, 517, 714
Lsp1109I GCAGC 2 cut(s) 224, 230
LweI GCATC 1 cut(s) 465
MaeI CTAG 3 cut(s) 377, 585, 675
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 73, 177, 652
MbiI CCGCTC 1 cut(s) 576
MboI GATC 3 cut(s) 71, 175, 650
MboII GAAGA 8 cut(s) 35, 44, 47, 94, 124, 131, 134, 423
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 4 cut(s) 419, 456, 501, 603
MluCI AATT 3 cut(s) 149, 196, 234
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 3 cut(s) 205, 339, 369
MnlI CCTC 3 cut(s) 475, 553, 614
MseI TTAA 5 cut(s) 329, 407, 591, 716, 721
MslI CAYNNNNRTG 1 cut(s) 611
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 4 cut(s) 69, 173, 413, 504
MspR9I CCNGG 3 cut(s) 69, 173, 414
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 249
NciI CCSGG 3 cut(s) 69, 173, 414
NdeII GATC 3 cut(s) 71, 175, 650
NheI GCTAGC 1 cut(s) 584
NlaIII CATG 2 cut(s) 117, 276
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 276
NspV TTCGAA 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 479
PciSI GCTCTTC 2 cut(s) 57, 436
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 486
PfeI GAWTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 503
PkrI GCNGC 4 cut(s) 214, 245, 487, 553
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 303
PspPI GGNCC 1 cut(s) 711
PspXI VCTCGAGB 1 cut(s) 479
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 650
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 603
SapI GCTCTTC 2 cut(s) 57, 436
SaqAI TTAA 5 cut(s) 329, 407, 591, 716, 721
SatI GCNGC 4 cut(s) 213, 244, 486, 552
Sau3AI GATC 3 cut(s) 71, 175, 650
Sau96I GGNCC 1 cut(s) 711
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 3 cut(s) 69, 173, 414
SduI GDGCHC 4 cut(s) 419, 456, 501, 603
SfaNI GCATC 1 cut(s) 465
SfcI CTRYAG 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 479
SfuI TTCGAA 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 3 cut(s) 93, 406, 479
SmoI CTYRAG 3 cut(s) 93, 406, 479
Sse9I AATT 3 cut(s) 149, 196, 234
SsiI CCGC 8 cut(s) 252, 371, 485, 531, 551, 554, 574, 617
SspMI CTAG 3 cut(s) 377, 585, 675
SstI GAGCTC 1 cut(s) 603
StyD4I CCNGG 3 cut(s) 67, 171, 412
TaiI ACGT 1 cut(s) 306
TaqI TCGA 7 cut(s) 74, 178, 299, 473, 480, 516, 630
TaqII GACCGA 1 cut(s) 125
TasI AATT 3 cut(s) 149, 196, 234
TauI GCSGC 2 cut(s) 488, 554
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 5 cut(s) 329, 407, 591, 716, 721
Tru9I TTAA 5 cut(s) 329, 407, 591, 716, 721
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 212, 243
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 17, 194, 270, 676
Vha464I CTTAAG 1 cut(s) 406
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 479
XspI CTAG 3 cut(s) 377, 585, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.