pycom10g14540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000500
Physical Location & Seq
Reverse (-)
17905530 .. 17905826
297 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14540.1

Sequence Viewer

Length: 297 bp
ATGGAAAATATTGGAGGAGCTGCAGAAAAGGGGCTGAAGCAGCAGAAGAACTCAGATGTGAATGAGGGGAAAGAAGCAGAGAAAGCTACGAAGATGAAGCCGAACTCAACAGAAGAGGAGATGATGAAGTTCATGGTTCCGAGGGAGACAAACGGCTCATGCTTCAAGCCAAAAGCTGGAAGTGTGTTTCCCGCCAAGAGAAAATCCGTGAAACGCATGATGTTTGATCGTTTTGTGCTCAAGCACTTTGGCTCCTCTGCTGTGAGCGTGTGGCCTCCCAATCCCCACAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

9.84

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 3 cut(s) 20, 86, 176
AluI AGCT 3 cut(s) 20, 86, 176
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 20, 40
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 7, 52
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 21, 41
BlsI GCNGC 2 cut(s) 22, 42
BmiI GGNNCC 2 cut(s) 138, 253
BpuEI CTTGAG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 3 cut(s) 30, 131, 244
BseXI GCAGC 2 cut(s) 7, 52
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 138, 253
BspMAI CTGCAG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 52
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 40, 83
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 7, 52
BsuRI GGCC 1 cut(s) 274
CviAII CATG 3 cut(s) 133, 159, 217
CviJI RGCY 9 cut(s) 20, 34, 86, 100, 156, 169, 176, 252, 274
CviKI_1 RGCY 9 cut(s) 20, 34, 86, 100, 156, 169, 176, 252, 274
DdeI CTNAG 1 cut(s) 52
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 56
FaeI CATG 3 cut(s) 136, 162, 220
FaiI YATR 3 cut(s) 134, 160, 218
FatI CATG 3 cut(s) 132, 158, 216
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 21, 41
Fsp4HI GCNGC 2 cut(s) 21, 41
GluI GCNGC 2 cut(s) 21, 41
HaeIII GGCC 1 cut(s) 274
Hin1II CATG 3 cut(s) 136, 162, 220
Hpy188I TCNGA 2 cut(s) 55, 141
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 83
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 3 cut(s) 136, 162, 220
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 17, 257
LpnPI CCDG 1 cut(s) 162
Lsp1109I GCAGC 2 cut(s) 7, 52
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 58, 103, 125
MhlI GDGCHC 1 cut(s) 240
MnlI CCTC 6 cut(s) 8, 58, 109, 135, 265, 285
MwoI GCNNNNNNNGC 2 cut(s) 40, 83
NdeII GATC 1 cut(s) 226
NlaIII CATG 3 cut(s) 136, 162, 220
NlaIV GGNNCC 2 cut(s) 138, 253
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 2 cut(s) 22, 42
PspN4I GGNNCC 2 cut(s) 138, 253
PstI CTGCAG 1 cut(s) 25
SatI GCNGC 2 cut(s) 21, 41
Sau3AI GATC 1 cut(s) 226
SduI GDGCHC 1 cut(s) 240
SetI ASST 3 cut(s) 22, 88, 178
SfcI CTRYAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 10
TseI GCWGC 2 cut(s) 20, 40
TspDTI ATGAA 3 cut(s) 110, 121, 140
TspGWI ACGGA 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.