Prupe.8G205900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000500
Physical Location & Seq
Reverse (-)
19269029 .. 19269274
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G205900.1

Sequence Viewer

Length: 246 bp
ATGAAGCTGAAGTTGAGTTCATCTCAAGATCAAAGCAAGGCTGAGCCACGGTTGTTCAAACCAAAAGCTGGAAGTGTGTTCCCGGTGAAGAAGAGGTTAGTGAAGAGGATGATGTTTGATCAAATTGTCCAATGCTTTTGCTCTGTTTCAGTTTCAGAGAGTATTACTACTAGGCCTTCTTCAGCTTCTGCTTCGAAGGCCAACAAGGTCGCCAGCAACCAAGTTTACCCAAGCCCACCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.87

Weight (kDa)

10.25

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AcuI CTGAAG 2 cut(s) 29, 165
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 7, 68, 185
AluI AGCT 3 cut(s) 7, 68, 185
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 2 cut(s) 173, 198
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 194
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu1102I GCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 33
BshFI GGCC 2 cut(s) 175, 200
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 68
BsnI GGCC 2 cut(s) 175, 200
Bsp119I TTCGAA 1 cut(s) 194
Bsp143I GATC 2 cut(s) 28, 118
Bsp1720I GCTNAGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 175, 200
BspCNI CTCAG 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 28, 118
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 86, 98
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 2 cut(s) 31, 121
BstMBI GATC 2 cut(s) 28, 118
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 175, 200
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 214
CaiI CAGNNNCTG 1 cut(s) 188
CviJI RGCY 8 cut(s) 7, 41, 46, 68, 175, 185, 200, 234
CviKI_1 RGCY 8 cut(s) 7, 41, 46, 68, 175, 185, 200, 234
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 30, 120
DpnII GATC 2 cut(s) 28, 118
Eam1104I CTCTTC 2 cut(s) 86, 98
EarI CTCTTC 2 cut(s) 86, 98
Eco147I AGGCCT 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 29, 165
FaiI YATR 1 cut(s) 244
FbaI TGATCA 1 cut(s) 118
FokI GGATG 1 cut(s) 121
FspBI CTAG 1 cut(s) 171
HaeIII GGCC 2 cut(s) 175, 200
HapII CCGG 1 cut(s) 83
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 186, 190
HpyCH4III ACNGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 28, 118
LpnPI CCDG 3 cut(s) 54, 96, 226
MaeI CTAG 1 cut(s) 171
MalI GATC 2 cut(s) 30, 120
MboI GATC 2 cut(s) 28, 118
MboII GAAGA 4 cut(s) 100, 103, 115, 171
MluCI AATT 1 cut(s) 123
MnlI CCTC 2 cut(s) 87, 99
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 28, 118
NspV TTCGAA 1 cut(s) 194
PceI AGGCCT 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 188
Sau3AI GATC 2 cut(s) 28, 118
ScrFI CCNGG 1 cut(s) 83
SetI ASST 5 cut(s) 9, 70, 98, 187, 210
SfuI TTCGAA 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 123
SseBI AGGCCT 1 cut(s) 175
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 9, 17
Van91I CCANNNNNTGG 1 cut(s) 68
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.