pycom05g16480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000500
Physical Location & Seq
Reverse (-)
19736832 .. 19737486
655 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16480.1

Sequence Viewer

Length: 345 bp
ATGATGAAGAAGACAAACTACTACATGCATGTTTTGATGAACTCTATGCAAATTTCCTCACACAATCAACACACACAGAGACAGAGAGAGATGTCAGCGAAGGCAAGTTTAGAAGCAAAGCCAAAAGGGATGCTGATGAAATTGAACTCATCTCAGAAAATAGACATGAAGCCTGATTGTTTCAAACCGCAAGCAGGTGTGACTGCGAGCGTAATTCCAGCAAAGAGGAGGTCAGTGAAGCGAATGATTCTTGATGATATCGTCCAATTTTTCTCTTCGGTTTTCACAACCGACAAGGCTAAAGCGCCAAACACCAAGAACAAGAAGATGATCAGCATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.0

Weight (kDa)

10.3

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AciI CCGC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 2 cut(s) 145, 184
Alw26I GTCTC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 1 cut(s) 307
BarI GAAGNNNNNNTAC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 17
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 185
BmsI GCATC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 335
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 330
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 185
BssMI GATC 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 192, 208
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 330
BstNSI RCATGY 2 cut(s) 28, 32
BstV2I GAAGAC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 192, 208
CfoI GCGC 1 cut(s) 307
CviAII CATG 3 cut(s) 25, 29, 166
CviJI RGCY 3 cut(s) 121, 172, 299
CviKI_1 RGCY 3 cut(s) 121, 172, 299
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 259
EcoRV GATATC 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 30
FaeI CATG 3 cut(s) 28, 32, 169
FaiI YATR 4 cut(s) 26, 30, 47, 167
FatI CATG 3 cut(s) 24, 28, 165
FbaI TGATCA 1 cut(s) 330
FokI GGATG 1 cut(s) 142
GlaI GCGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 308
HhaI GCGC 1 cut(s) 307
Hin1II CATG 3 cut(s) 28, 32, 169
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 28, 49
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 3 cut(s) 28, 32, 169
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 1 cut(s) 330
LpnPI CCDG 3 cut(s) 180, 186, 231
LweI GCATC 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 4 cut(s) 19, 22, 267, 337
MluCI AATT 4 cut(s) 51, 140, 213, 266
MnlI CCTC 3 cut(s) 67, 219, 222
Mph1103I ATGCAT 1 cut(s) 30
NdeII GATC 1 cut(s) 330
NlaIII CATG 3 cut(s) 28, 32, 169
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 28, 32
PaqCI CACCTGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 330
SetI ASST 2 cut(s) 199, 233
SfaNI GCATC 1 cut(s) 120
Sse9I AATT 4 cut(s) 51, 140, 213, 266
SsiI CCGC 1 cut(s) 188
TasI AATT 4 cut(s) 51, 140, 213, 266
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 20, 53, 152, 182
TspRI CASTG 1 cut(s) 240
XapI RAATTY 1 cut(s) 51
XceI RCATGY 2 cut(s) 28, 32
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.