Rh6AG379900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000500
Physical Location & Seq
Forward (+)
57869924 .. 57870727
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG379900.1

Sequence Viewer

Length: 309 bp
ATGGCATCGAAGCTTCAGAACCGTGTGGGTGCGAAAGCTGTGTGGGCCGTGACAGATCAGCTGCCGCTGCTGGCGGCGGCGGAGCCCGACAACAAGAAGAAAGGTGGTAGTCTCAGTTTGGTGCCGGCAAAGAGAAGGCTGGTCAAGACCATGGTGTTTCTTTCCATTGTTGAGTTCATTGGCTCCATTTTCTGTGCCTCTGGAGACACCGAAGCCAACTCCGCCGATTCCAAGTCCAAAATCCCAAGTGCCAGCAAATCCAAGCAGATTGTCCCAGAGCCGGACGGTTTGACTTCTCAGAACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.71

Weight (kDa)

9.61

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 5 cut(s) 65, 74, 77, 80, 222
AfiI CCNNNNNNNGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 13, 38, 61
AluI AGCT 3 cut(s) 13, 38, 61
Alw26I GTCTC 2 cut(s) 116, 198
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 61, 67
AspS9I GGNCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 48, 54
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 116, 198
BisI GCNGC 5 cut(s) 62, 65, 68, 75, 78
BlsI GCNGC 5 cut(s) 63, 66, 69, 76, 79
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 3 cut(s) 84, 123, 184
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 48, 54
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 121
BsiSI CCGG 2 cut(s) 125, 281
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 116, 198
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 5 cut(s) 65, 74, 77, 80, 222
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 84, 123, 184
BspT107I GGYRCC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 23, 287
BstC8I GCNNGC 3 cut(s) 72, 126, 253
BstDEI CTNAG 2 cut(s) 113, 297
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 116, 198
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 44, 67, 221
BstV1I GCAGC 2 cut(s) 48, 54
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 72, 126, 253
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 45
CviAII CATG 1 cut(s) 151
CviJI RGCY 9 cut(s) 13, 38, 47, 61, 85, 139, 183, 215, 280
CviKI_1 RGCY 9 cut(s) 13, 38, 47, 61, 85, 139, 183, 215, 280
DdeI CTNAG 2 cut(s) 113, 297
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 2 cut(s) 95, 211
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 154
FaiI YATR 2 cut(s) 152, 307
FaqI GGGAC 1 cut(s) 257
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 5 cut(s) 62, 65, 68, 75, 78
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 62, 65, 68, 75, 78
GluI GCNGC 5 cut(s) 62, 65, 68, 75, 78
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 125, 281
Hin1II CATG 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 125, 281
Hpy188I TCNGA 2 cut(s) 18, 300
Hpy188III TCNNGA 2 cut(s) 145, 201
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 23, 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 67, 221
HpyF3I CTNAG 2 cut(s) 113, 297
Hsp92II CATG 1 cut(s) 154
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 82, 188
LpnPI CCDG 7 cut(s) 56, 125, 138, 186, 265, 288, 294
Lsp1109I GCAGC 2 cut(s) 48, 54
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 87
MnlI CCTC 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 124
MspA1I CMGCKG 2 cut(s) 61, 67
MspI CCGG 2 cut(s) 125, 281
MwoI GCNNNNNNNGC 3 cut(s) 44, 67, 221
NaeI GCCGGC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 150
NdeII GATC 1 cut(s) 55
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 3 cut(s) 84, 123, 184
NmuCI GTSAC 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 5 cut(s) 63, 66, 69, 76, 79
PspN4I GGNNCC 3 cut(s) 84, 123, 184
PspPI GGNCC 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 61
SatI GCNGC 5 cut(s) 62, 65, 68, 75, 78
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 87
SetI ASST 4 cut(s) 15, 40, 63, 106
SfaNI GCATC 1 cut(s) 14
SsiI CCGC 5 cut(s) 65, 74, 77, 80, 222
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 23, 287
TaqI TCGA 1 cut(s) 8
TauI GCSGC 3 cut(s) 67, 77, 80
TfiI GAWTC 1 cut(s) 227
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 61, 67
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.