RLG00000011633

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000500
Physical Location & Seq
Reverse (-)
11201185 .. 11201490
306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011633

Sequence Viewer

Length: 306 bp
ATGGCGTCGAAGCTTCAGAACCGTGGGGGTGCGAAAGCTGTGTGGGCCGTGACGGATCAGCCGCCGTTGGTGGTGGCGACGGTGCCCAACAAGAAGAAAGGTGGTACTCTCAGTTTGGTGCCGGCAAAGAGAAGGCTGGTGAAGACCATGGCGTTTCTTTCCATTATTGAGTTCGTTGGCTCCATTTTCTGTGCCTCTGGAGCCACCCAAACCAACTCCGCCAAGTCCACGTCCAAAATCCCAAGTGCCAGCAATTCCAAGCAGATTATCCCTGAGCCGGACGGTTTGACTTCTCAGAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.55

Weight (kDa)

10.42

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 82, 118
AciI CCGC 2 cut(s) 62, 219
AclWI GGATC 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 277
AjiI CACGTC 1 cut(s) 231
AluBI AGCT 2 cut(s) 13, 38
AluI AGCT 2 cut(s) 13, 38
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 87
BanI GGYRCC 2 cut(s) 82, 118
BbsI GAAGAC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 32, 49
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 4 cut(s) 84, 120, 181, 202
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 22, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 22, 147
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 124, 264
BseSI GKGCMC 1 cut(s) 87
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 2 cut(s) 82, 118
BsiSI CCGG 2 cut(s) 122, 278
BslI CCNNNNNNNGG 1 cut(s) 277
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 62, 219
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 123, 265
BspLI GGNNCC 4 cut(s) 84, 120, 181, 202
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 82, 118
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 22, 147
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 3 cut(s) 23, 82, 284
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 123, 250
BstDEI CTNAG 3 cut(s) 110, 273, 294
BstDSI CCRYGG 2 cut(s) 22, 147
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 44, 200
BstSLI GKGCMC 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 2 cut(s) 22, 147
BtrI CACGTC 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 123, 250
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 148
CviJI RGCY 9 cut(s) 13, 38, 47, 61, 136, 180, 203, 277, 301
CviKI_1 RGCY 9 cut(s) 13, 38, 47, 61, 136, 180, 203, 277, 301
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 110, 273, 294
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 304
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 122, 278
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 2 cut(s) 122, 278
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 18, 297
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 2 cut(s) 10, 82
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 3 cut(s) 23, 82, 284
HpyCH4IV ACGT 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 200
HpyF3I CTNAG 3 cut(s) 110, 273, 294
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 151
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 185, 200
LpnPI CCDG 6 cut(s) 122, 135, 183, 262, 285, 291
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 106, 154
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 253
MnlI CCTC 1 cut(s) 205
MroNI GCCGGC 1 cut(s) 121
MspI CCGG 2 cut(s) 122, 278
MwoI GCNNNNNNNGC 2 cut(s) 44, 200
NaeI GCCGGC 1 cut(s) 123
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 55
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 4 cut(s) 84, 120, 181, 202
NmuCI GTSAC 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 63
PspN4I GGNNCC 4 cut(s) 84, 120, 181, 202
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 87
SetI ASST 4 cut(s) 15, 40, 103, 233
Sse9I AATT 1 cut(s) 253
SsiI CCGC 2 cut(s) 62, 219
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 23, 82, 284
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 253
TauI GCSGC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.