Rh6BG386600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000500
Physical Location & Seq
Reverse (-)
61448043 .. 61448375
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG386600.1

Sequence Viewer

Length: 333 bp
ATGGCGTCGGAGCTTCAGAAAAATGCCGGAGCGGAAATTGCGACAGATCTGCCACCGCCGCCGGTGGAAAAGCCCAATATGGAACCTAATAGCTCTCTCAAACCCACCAAGAGGAAAGGTGGTAGTCTGTTGCCGGCGAAGAGAAGGTTAGTCAAGACCATGGCATTTCTTTCCGTTGTTCAATTCTTTAGCTCAATCTTCTGTGCCCCCGAACCCCGTTCAGCCCGTTCCACGCCACCCGAAATAATCCCACACGCCAAGATTTCCAAGCAGATTTTCCCAGAGCGGAGCCAGGATGAGGACTCCCAAAGTCCCAATGCGTACTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.07

Weight (kDa)

9.46

Isoelectric Point (pI)

86.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 32, 286
AciI CCGC 4 cut(s) 32, 56, 59, 286
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 111, 298
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 13, 93, 192
AluI AGCT 3 cut(s) 13, 93, 192
BaeGI GKGCMC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 293
BglII AGATCT 1 cut(s) 46
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 84, 290
BmrFI CCNGG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 298
Bse118I RCCGGY 2 cut(s) 61, 133
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 111, 298
BseSI GKGCMC 1 cut(s) 208
BsiSI CCGG 3 cut(s) 27, 62, 134
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 111, 298
BsmFI GGGAC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 4 cut(s) 32, 56, 59, 286
BspLI GGNNCC 2 cut(s) 84, 290
BsrBI CCGCTC 2 cut(s) 32, 286
BsrFI RCCGGY 2 cut(s) 61, 133
BssAI RCCGGY 2 cut(s) 61, 133
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 38, 58
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 135
Cfr10I RCCGGY 2 cut(s) 61, 133
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 160
CviJI RGCY 6 cut(s) 13, 73, 93, 192, 224, 291
CviKI_1 RGCY 6 cut(s) 13, 73, 93, 192, 224, 291
CviQI GTAC 1 cut(s) 322
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 80, 161
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 3 cut(s) 27, 62, 134
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 163
HinfI GANTC 1 cut(s) 302
HpaII CCGG 3 cut(s) 27, 62, 134
Hpy188I TCNGA 2 cut(s) 10, 18
Hpy188III TCNNGA 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 58
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 163
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 10, 29, 288
LpnPI CCDG 6 cut(s) 40, 75, 147, 278, 294, 305
MalI GATC 1 cut(s) 48
MbiI CCGCTC 2 cut(s) 32, 286
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 151, 190
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 36, 182
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 2 cut(s) 105, 292
MroNI GCCGGC 1 cut(s) 133
MspI CCGG 3 cut(s) 27, 62, 134
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 38, 58
NaeI GCCGGC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 159
NdeII GATC 1 cut(s) 46
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 84, 290
PdiI GCCGGC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 84, 290
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 208
SetI ASST 6 cut(s) 15, 88, 95, 121, 149, 194
SgrAI CRCCGGYG 1 cut(s) 61
Sse9I AATT 2 cut(s) 36, 182
SsiI CCGC 4 cut(s) 32, 56, 59, 286
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 159
TasI AATT 2 cut(s) 36, 182
TauI GCSGC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.