Prupe.8G206100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000500
Physical Location & Seq
Reverse (-)
19311986 .. 19312703
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G206100.1

Sequence Viewer

Length: 360 bp
ATGGCAATGAAGAAATCTTCAGATGAAAGGAAGGCGCTGAAGTACTTGAAGCCAGATGGGGAAGAAGACCTCCTCTGCCCAAAAACAGAGCACAATCCAAAGGAGCCCATGAAGCTGAATTTGAGCCCATCTCAAGATCAAACCAAGGCTGAGCCATGGTTGTTCAAACCAAAACCTGGCAGTGTCTTCCCTGTGAAGAAGAGGTTAGTGAAGAGGATGATGTTTGATCAAATTGTCCAAAGCTTTTGCTCTGTTTCAGATTGTCCTTCAGCTTCTGCTGCTGGAGCCTCTGAAACCACCACATCATCAAACGCCAACAAGGTCATCAGCAACCACGTTTACCCAAGCCCACCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.16

Weight (kDa)

9.17

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 59, 252
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 49, 166
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 3 cut(s) 115, 243, 272
AluI AGCT 3 cut(s) 115, 243, 272
Alw21I GWGCWC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 108, 128
BbsI GAAGAC 2 cut(s) 72, 178
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 50, 136
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 1 cut(s) 279
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 105, 286
BmrFI CCNGG 1 cut(s) 177
BpiI GAAGAC 2 cut(s) 72, 178
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 144, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 144, 155
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 176
Bsp1286I GDGCHC 3 cut(s) 93, 108, 128
Bsp143I GATC 2 cut(s) 136, 226
Bsp1720I GCTNAGC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 105, 286
BsrDI GCAATG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 144, 155
BssMI GATC 2 cut(s) 136, 226
BssT1I CCWWGG 2 cut(s) 144, 155
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 194, 206
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 139, 229
BstMBI GATC 2 cut(s) 136, 226
BstMWI GCNNNNNNNGC 3 cut(s) 112, 278, 284
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 2 cut(s) 72, 178
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 109, 156
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 138, 228
DpnII GATC 2 cut(s) 136, 226
Eam1104I CTCTTC 2 cut(s) 194, 206
EarI CTCTTC 2 cut(s) 194, 206
Eco130I CCWWGG 2 cut(s) 144, 155
Eco24I GRGCYC 2 cut(s) 108, 128
Eco57I CTGAAG 2 cut(s) 59, 252
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 144, 155
EcoT38I GRGCYC 2 cut(s) 108, 128
ErhI CCWWGG 2 cut(s) 144, 155
FaeI CATG 2 cut(s) 112, 159
FaiI YATR 3 cut(s) 110, 157, 358
FatI CATG 2 cut(s) 108, 155
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 2 cut(s) 108, 128
Fsp4HI GCNGC 1 cut(s) 279
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 38
HhaI GCGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 112, 159
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 3 cut(s) 22, 259, 292
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 2 cut(s) 25, 276
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 278, 284
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 2 cut(s) 112, 159
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 136, 226
LmnI GCTCC 2 cut(s) 103, 284
LpnPI CCDG 5 cut(s) 66, 162, 189, 204, 267
Lsp1109I GCAGC 1 cut(s) 265
MaeII ACGT 1 cut(s) 336
MalI GATC 2 cut(s) 138, 228
MboI GATC 2 cut(s) 136, 226
MboII GAAGA 8 cut(s) 9, 22, 74, 77, 178, 208, 211, 223
MhlI GDGCHC 3 cut(s) 93, 108, 128
MluCI AATT 2 cut(s) 118, 231
MnlI CCTC 5 cut(s) 80, 83, 195, 207, 298
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 112, 278, 284
NcoI CCATGG 1 cut(s) 155
NdeII GATC 2 cut(s) 136, 226
NlaIII CATG 2 cut(s) 112, 159
NlaIV GGNNCC 2 cut(s) 105, 286
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 105, 286
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 136, 226
ScaI AGTACT 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 3 cut(s) 93, 108, 128
SetI ASST 8 cut(s) 72, 117, 178, 206, 245, 274, 324, 339
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 118, 231
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 144, 155
TaiI ACGT 1 cut(s) 339
TasI AATT 2 cut(s) 118, 231
TatI WGTACW 1 cut(s) 42
TscAI CASTG 1 cut(s) 187
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 23, 39, 125
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 118
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.