FvH4_2g28080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22136176 .. 22136509
334 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28080.t1

Sequence Viewer

Length: 237 bp
ATGGCTTCAGAGCTTCAAAACCGTGCCGCATCGGAGGTTGCGACAGATCAACCACCGCTGCTGGTGGAAAAGCCTAACAGCATGCCCATCAAGAAGAAAGGTGGTGGTCCGAGTCTGTTGCCGGCGAGGAGAAGATCTTCCCAAACCCGAGCCAGGATGACCAAACCTAAAGTCCCAATGCATACCGCCGGCAACTTACAAGCTCTACTTGAACTGATCGGCGGCAGCCGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.39

Weight (kDa)

11.34

Isoelectric Point (pI)

76.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 27, 56, 186, 222
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 2 cut(s) 17, 212
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 2 cut(s) 13, 203
AluI AGCT 2 cut(s) 13, 203
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 58, 225
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 154
BglII AGATCT 1 cut(s) 134
BisI GCNGC 4 cut(s) 27, 59, 223, 226
BlsI GCNGC 4 cut(s) 28, 60, 224, 227
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 2 cut(s) 121, 188
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 122, 189
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 3 cut(s) 46, 134, 216
BspACI CCGC 4 cut(s) 27, 56, 186, 222
BsrFI RCCGGY 2 cut(s) 121, 188
BssAI RCCGGY 2 cut(s) 121, 188
BssMI GATC 3 cut(s) 46, 134, 216
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 83, 123, 190
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 3 cut(s) 49, 137, 219
BstMBI GATC 3 cut(s) 46, 134, 216
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 3 cut(s) 83, 123, 190
Cfr10I RCCGGY 2 cut(s) 121, 188
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 1 cut(s) 82
CviJI RGCY 6 cut(s) 5, 13, 73, 152, 203, 228
CviKI_1 RGCY 6 cut(s) 5, 13, 73, 152, 203, 228
DpnI GATC 3 cut(s) 48, 136, 218
DpnII GATC 3 cut(s) 46, 134, 216
Eco47I GGWCC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 183
FaeI CATG 1 cut(s) 85
FaiI YATR 2 cut(s) 83, 183
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 4 cut(s) 27, 59, 223, 226
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 4 cut(s) 27, 59, 223, 226
GluI GCNGC 4 cut(s) 27, 59, 223, 226
HapII CCGG 2 cut(s) 122, 189
Hin1II CATG 1 cut(s) 85
HinfI GANTC 1 cut(s) 112
HpaII CCGG 2 cut(s) 122, 189
Hpy188I TCNGA 4 cut(s) 10, 34, 111, 236
Hpy188III TCNNGA 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 181
Hsp92II CATG 1 cut(s) 85
KroI GCCGGC 2 cut(s) 121, 188
KroNI GCCGGC 2 cut(s) 123, 190
Kzo9I GATC 3 cut(s) 46, 134, 216
LpnPI CCDG 5 cut(s) 47, 135, 139, 166, 202
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 38
MalI GATC 3 cut(s) 48, 136, 218
MboI GATC 3 cut(s) 46, 134, 216
MboII GAAGA 3 cut(s) 106, 129, 144
MflI RGATCY 1 cut(s) 134
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 2 cut(s) 28, 120
Mph1103I ATGCAT 1 cut(s) 183
MroNI GCCGGC 2 cut(s) 121, 188
MroXI GAANNNNTTC 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 2 cut(s) 122, 189
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
NaeI GCCGGC 2 cut(s) 123, 190
NdeII GATC 3 cut(s) 46, 134, 216
NgoMIV GCCGGC 2 cut(s) 121, 188
NlaIII CATG 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 183
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 2 cut(s) 123, 190
PdmI GAANNNNTTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 28, 60, 224, 227
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 134
SatI GCNGC 4 cut(s) 27, 59, 223, 226
Sau3AI GATC 3 cut(s) 46, 134, 216
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 154
SetI ASST 5 cut(s) 15, 39, 103, 169, 205
SfaNI GCATC 1 cut(s) 38
SinI GGWCC 1 cut(s) 107
SphI GCATGC 1 cut(s) 85
SsiI CCGC 4 cut(s) 27, 56, 186, 222
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 23
TauI GCSGC 2 cut(s) 29, 225
TseI GCWGC 2 cut(s) 58, 225
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.