FvH4_2g28220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22193257 .. 22193932
676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28220.t1

Sequence Viewer

Length: 267 bp
ATGGTGTTGAAGCTGGAGATGAACACAGGTACAACGAGCAAGGATGGAATTTCACTGGCCGACCTCAGGCCCGTCAAGAAGGCTACCGGTAGTGTGTTCCCGGCGAATAGAAGGTTGGTGAAGGCTATGGTGTTTGCTTCCCTTCTGCACTTCTTCGCCTCTATTTTCTGTTCCTCTGCAGAAGGAGGTGGGGGAAACCGGAAATCCCAACGTCCAGGATTATCAAGCAGGCTTGCAAAAGAGGAATTAGAAAATATGTGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.58

Weight (kDa)

10.12

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 48
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 86
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AoxI GGCC 2 cut(s) 57, 68
ApoI RAATTY 1 cut(s) 48
AsiGI ACCGGT 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 65
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 101, 216
BmgT120I GGNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 101, 216
BpmI CTGGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 86, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 60
Bse21I CCTNAGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 49, 267
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 2 cut(s) 59, 70
BshTI ACCGGT 1 cut(s) 86
BsiSI CCGG 3 cut(s) 87, 101, 199
BslI CCNNNNNNNGG 1 cut(s) 66
BsnI GGCC 2 cut(s) 59, 70
BspANI GGCC 2 cut(s) 59, 70
BspCNI CTCAG 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 230, 234
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 49, 267
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 99, 214
BstSFI CTRYAG 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 65
BsuRI GGCC 2 cut(s) 59, 70
BtsCI GGATG 2 cut(s) 49, 267
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 230, 234
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 30
CspAI ACCGGT 1 cut(s) 86
CviJI RGCY 6 cut(s) 13, 59, 70, 83, 125, 232
CviKI_1 RGCY 6 cut(s) 13, 59, 70, 83, 125, 232
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 214
FaiI YATR 2 cut(s) 128, 257
FokI GGATG 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 2 cut(s) 59, 70
HapII CCGG 3 cut(s) 87, 101, 199
HpaII CCGG 3 cut(s) 87, 101, 199
HphI GGTGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 76
HpyAV CCTTC 5 cut(s) 73, 105, 115, 152, 176
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 148, 179, 236
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 211
LpnPI CCDG 9 cut(s) 12, 41, 52, 100, 114, 201, 212, 214, 228
MaeII ACGT 1 cut(s) 211
MboII GAAGA 1 cut(s) 145
MluCI AATT 2 cut(s) 48, 245
MnlI CCTC 5 cut(s) 74, 169, 179, 184, 235
MspI CCGG 3 cut(s) 87, 101, 199
MspR9I CCNGG 2 cut(s) 101, 216
MvaI CCWGG 1 cut(s) 216
NciI CCSGG 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspPI GGNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 101, 216
SetI ASST 6 cut(s) 15, 31, 66, 116, 190, 214
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 48, 245
StyD4I CCNGG 2 cut(s) 99, 214
TaiI ACGT 1 cut(s) 214
TasI AATT 2 cut(s) 48, 245
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 60
XapI RAATTY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.