FvH4_2g28200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Forward (+)
22184511 .. 22184825
315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28200.t1

Sequence Viewer

Length: 315 bp
ATGTCTTCGGAGCTTCATGACCGTGCCGGATCGGAAGTTGCGATAGATCAGCCACCGCTGCTGGTGGAAAAGCCGAACATGGAGCCTAATAACTTTCTCATGCCCATCAAGAAGAAAGGTGGTAGTTCGGGTCTGTTGCCGGCGAGGAGAAGGTTAGTCAAGACCATGGTATTCCTTTCCATTGTTCAATTCCTTAGCTCAATCTTCTGTGCTAATGGAGCCTCTGAACCCGGTTCAGCCCGTTCTACGCCACCCGAAATCCCACATGCCAATATTTCCAAGAAGATTTTCCCAAAGCCGATCCAGGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.32

Weight (kDa)

9.3

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclWI GGATC 2 cut(s) 37, 295
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 2 cut(s) 13, 198
AluI AGCT 2 cut(s) 13, 198
AlwI GGATC 2 cut(s) 37, 295
ApeKI GCWGC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 231
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 1 cut(s) 231
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 231, 305
BmiI GGNNCC 2 cut(s) 84, 220
BmrFI CCNGG 2 cut(s) 231, 305
Bpu10I CCTNAGC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 139
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 45
BsiSI CCGG 3 cut(s) 27, 140, 231
Bsp143I GATC 3 cut(s) 29, 46, 300
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 84, 220
BspPI GGATC 2 cut(s) 37, 295
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 29, 46, 300
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 3 cut(s) 32, 49, 303
BstMBI GATC 3 cut(s) 29, 46, 300
BstMWI GCNNNNNNNGC 2 cut(s) 58, 218
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 229, 303
BstV1I GCAGC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 141
CciI TCATGA 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 139
CviAII CATG 5 cut(s) 17, 79, 100, 166, 266
CviJI RGCY 8 cut(s) 13, 52, 73, 85, 198, 221, 239, 298
CviKI_1 RGCY 8 cut(s) 13, 52, 73, 85, 198, 221, 239, 298
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 31, 48, 302
DpnII GATC 3 cut(s) 29, 46, 300
Eco130I CCWWGG 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 5 cut(s) 20, 82, 103, 169, 269
FaiI YATR 5 cut(s) 18, 80, 101, 167, 267
FatI CATG 5 cut(s) 16, 78, 99, 165, 265
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 3 cut(s) 27, 140, 231
Hin1II CATG 5 cut(s) 20, 82, 103, 169, 269
HpaII CCGG 3 cut(s) 27, 140, 231
Hpy188I TCNGA 3 cut(s) 10, 34, 226
Hpy188III TCNNGA 3 cut(s) 17, 109, 160
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 218
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 5 cut(s) 20, 82, 103, 169, 269
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 29, 46, 300
LmnI GCTCC 3 cut(s) 10, 82, 218
LpnPI CCDG 5 cut(s) 40, 47, 153, 244, 290
Lsp1109I GCAGC 1 cut(s) 45
MalI GATC 3 cut(s) 31, 48, 302
MboI GATC 3 cut(s) 29, 46, 300
MboII GAAGA 3 cut(s) 124, 196, 295
MluCI AATT 1 cut(s) 188
MnlI CCTC 2 cut(s) 138, 232
MroNI GCCGGC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 3 cut(s) 27, 140, 231
MspR9I CCNGG 2 cut(s) 231, 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 58, 218
NaeI GCCGGC 1 cut(s) 141
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 165
NdeII GATC 3 cut(s) 29, 46, 300
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 5 cut(s) 20, 82, 103, 169, 269
NlaIV GGNNCC 2 cut(s) 84, 220
NspI RCATGY 1 cut(s) 269
PagI TCATGA 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 84, 220
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 3 cut(s) 29, 46, 300
ScrFI CCNGG 2 cut(s) 231, 305
SetI ASST 4 cut(s) 15, 121, 155, 200
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 188
SsiI CCGC 1 cut(s) 56
SspI AATATT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 229, 303
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 23
TasI AATT 1 cut(s) 188
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 5
XceI RCATGY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.