FvH4_2g24233

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000500
Physical Location & Seq
Reverse (-)
19804709 .. 19805040
332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24233.t1

Sequence Viewer

Length: 273 bp
ATGGTGTCGAAGCTTCATAGCCATGTTGGCGAGAAAGCTGTGAGGGCGGTGATGGATCAGCCGTCGCCGACGAATCCCAACAAGAAGAAAGGTGGCAGCCTCAGTTTGGTGCCGGAAAAGAGAAAGCTGGTCAAGACCATGGCGTTTCTTTCCATTGTTGAGTTCGTTGGCTCCATTTTCTGTGCCTCTGGAGGCACCCAGACCAACTCCGCCGATTCCACGTCCAAAATCCCAAGTGCCAGGAATTCCAAGCGGACTGTCCCCGGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.51

Weight (kDa)

10.36

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 109, 194
AciI CCGC 3 cut(s) 47, 210, 253
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 106
AjiI CACGTC 1 cut(s) 222
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 3 cut(s) 13, 38, 127
AluI AGCT 3 cut(s) 13, 38, 127
AlwI GGATC 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 2 cut(s) 264, 265
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 267
BanI GGYRCC 2 cut(s) 109, 194
BbvI GCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 2 cut(s) 264, 265
BglI GCCNNNNNGGC 1 cut(s) 27
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 3 cut(s) 241, 264, 265
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 4 cut(s) 111, 172, 196, 268
BmrFI CCNGG 3 cut(s) 241, 264, 265
BpmI CTGGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 264, 265
BsaJI CCNNGG 3 cut(s) 138, 262, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 3 cut(s) 138, 262, 263
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 109, 194
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 113, 264
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 3 cut(s) 47, 210, 253
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 4 cut(s) 111, 172, 196, 268
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 109, 194
BssECI CCNNGG 3 cut(s) 138, 262, 263
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 138
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 27, 44
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 3 cut(s) 239, 262, 263
BstV1I GCAGC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 267
Cfr9I CCCGGG 1 cut(s) 263
CviAII CATG 2 cut(s) 23, 139
CviJI RGCY 7 cut(s) 13, 21, 38, 61, 99, 127, 171
CviKI_1 RGCY 7 cut(s) 13, 21, 38, 61, 99, 127, 171
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 26, 142
FaiI YATR 3 cut(s) 18, 24, 140
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 22, 138
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 210
HapII CCGG 2 cut(s) 113, 264
Hin1II CATG 2 cut(s) 26, 142
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 73, 215
HpaII CCGG 2 cut(s) 113, 264
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 133, 189
Hpy99I CGWCG 2 cut(s) 67, 73
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 44
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 2 cut(s) 26, 142
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 6 cut(s) 113, 126, 174, 212, 226, 253
Lsp1109I GCAGC 1 cut(s) 108
MaeII ACGT 1 cut(s) 221
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 97
MluCI AATT 1 cut(s) 244
MnlI CCTC 4 cut(s) 36, 110, 185, 196
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 2 cut(s) 113, 264
MspR9I CCNGG 3 cut(s) 241, 264, 265
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 27, 44
NciI CCSGG 2 cut(s) 264, 265
NcoI CCATGG 1 cut(s) 138
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 26, 142
NlaIV GGNNCC 4 cut(s) 111, 172, 196, 268
PfeI GAWTC 2 cut(s) 73, 215
PkrI GCNGC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 4 cut(s) 111, 172, 196, 268
PspPI GGNCC 1 cut(s) 267
PspPPI RGGWCCY 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 3 cut(s) 241, 264, 265
SetI ASST 6 cut(s) 15, 40, 94, 129, 224, 272
SinI GGWCC 1 cut(s) 267
SmaI CCCGGG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 244
SsiI CCGC 3 cut(s) 47, 210, 253
StyD4I CCNGG 3 cut(s) 239, 262, 263
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 244
TfiI GAWTC 2 cut(s) 73, 215
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 5
TspMI CCCGGG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 244
XmaI CCCGGG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.