pycom12g16800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000500
Physical Location & Seq
Forward (+)
19090210 .. 19090467
258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16800.1

Sequence Viewer

Length: 258 bp
ATGGCAATGAAGAAGAAGAAGAACCCTAGCAAGGGAATGGTTGCAGCTGCTGGCAACAAAAAAGAAAGCTTTTGTAAACCAAATCTTTCAAATTATGCAAGTGTAATTCCAGCAAAGAGGAGGTCAGTGAAAAGGATGATGTTTGATTCAATGCTCAAATCTCTTGCCTCTTTTTTTCATCGCTGGTCATCGTCTTCCTCTCAAGACTCCAAGTCCAACAAGAAGACGACCAGCCTCATATTTTCAGACCAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

10.58

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21520
fragaria_vesca FvH4_2g24233 FvH4_2g28070 FvH4_2g28080 FvH4_2g28100 FvH4_2g28120 FvH4_2g28140 FvH4_2g28150 FvH4_2g28160 FvH4_2g28170 FvH4_2g28200 FvH4_2g28210 FvH4_2g28211 FvH4_2g28220 FvH4_2g28230
prunus_persica Prupe.1G487200_v2.0.a1 Prupe.3G116400_v2.0.a1 Prupe.8G205900_v2.0.a1 Prupe.8G206000_v2.0.a1 Prupe.8G206100_v2.0.a1 Prupe.8G206300_v2.0.a1
pyrus_communis pycom05g16480 pycom05g16510 pycom05g16520 pycom05g16540 pycom10g14500 pycom10g14510 pycom10g14540 pycom12g16800
rosa_chinensis RchiOBHm_Chr6g0297031 RchiOBHm_Chr6g0297041
rosa_laevigata RLG00000011633 RLG00000011635 RLG00000011636 RLG00000011637 RLG00000011638 RLG00000011643 RLG00000011644
rosa_roxburghii Rroxscaffold_2G00150260 Rroxscaffold_4G00302450 Rroxscaffold_7G00170860 Rroxscaffold_7G00170880 Rroxscaffold_7G00170890 Rroxscaffold_7G00170910 Rroxscaffold_7G00170920 Rroxscaffold_7G00170950 Rroxscaffold_7G00171000
rosa_rugosa Rorug01G0231200 Rorug06G0267900 Rorug06G0268000 Rorug06G0268100 Rorug06G0268200 Rorug06G0268600 Rorug06G0268700 Rorug06G0268700 Rorug06G0268700 Rorug06G0269100
rosa_samantha Rh6AG378600 Rh6AG378700 Rh6AG379000 Rh6AG379200 Rh6AG379300 Rh6AG379600 Rh6AG379900 Rh6AG380100 Rh6AG380300 Rh6BG386600 Rh6BG386700 Rh6BG386800 Rh6BG387300 Rh6BG387600 Rh6BG388100 Rh6BG388300 Rh6CG392500 Rh6CG392600 Rh6CG392700 Rh6CG393000 Rh6CG393100 Rh6CG393200 Rh6CG393300 Rh6CG393500 Rh6CG393700 Rh6DG379200 Rh6DG379400 Rh6DG379600 Rh6DG380100 Rh6DG380200 Rh6DG380300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 31, 32
AgsI TTSAA 2 cut(s) 90, 150
AhdI GACNNNNNGTC 1 cut(s) 211
AluBI AGCT 2 cut(s) 47, 69
AluI AGCT 2 cut(s) 47, 69
AlwNI CAGNNNCTG 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 44, 47
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
BbsI GAAGAC 2 cut(s) 186, 230
BbvI GCAGC 2 cut(s) 34, 56
BfaI CTAG 2 cut(s) 27, 256
BisI GCNGC 2 cut(s) 45, 48
BlsI GCNGC 2 cut(s) 46, 49
BmeRI GACNNNNNGTC 1 cut(s) 211
BpiI GAAGAC 2 cut(s) 186, 230
BpuEI CTTGAG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 32
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 31, 32
BseMI GCAATG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 34, 56
BslI CCNNNNNNNGG 2 cut(s) 31, 32
BsrDI GCAATG 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 34, 56
BstV2I GAAGAC 2 cut(s) 186, 230
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 50
CviJI RGCY 3 cut(s) 47, 69, 234
CviKI_1 RGCY 3 cut(s) 47, 69, 234
DriI GACNNNNNGTC 1 cut(s) 211
Eam1105I GACNNNNNGTC 1 cut(s) 211
FaiI YATR 2 cut(s) 96, 239
Fnu4HI GCNGC 2 cut(s) 45, 48
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 45, 48
FspBI CTAG 2 cut(s) 27, 256
GluI GCNGC 2 cut(s) 45, 48
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 2 cut(s) 146, 206
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 44, 98
LpnPI CCDG 4 cut(s) 36, 123, 169, 244
Lsp1109I GCAGC 2 cut(s) 34, 56
MaeI CTAG 2 cut(s) 27, 256
MboII GAAGA 6 cut(s) 22, 25, 28, 31, 186, 235
MluCI AATT 2 cut(s) 91, 105
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 111, 114, 178, 208, 245
MspA1I CMGCKG 1 cut(s) 47
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 46, 49
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 45, 48
SchI GAGTC 1 cut(s) 200
SetI ASST 3 cut(s) 49, 71, 125
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 91, 105
SspMI CTAG 2 cut(s) 27, 256
TasI AATT 2 cut(s) 91, 105
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 44, 47
TspDTI ATGAA 2 cut(s) 23, 167
TspRI CASTG 1 cut(s) 132
XspI CTAG 2 cut(s) 27, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.