FvH4_1g25221

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000441
Physical Location & Seq
Forward (+)
17033269 .. 17035599
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25221.t1

Sequence Viewer

Length: 1461 bp
ATGGTGAAAGAGTACTCCCACCTTGAGTTTAGGTGCGACCTTCTCAAGTTTGGTCGCCTAATGACTGTTGAGATAAGGGAAAATGTTACTGAACTGAAGCTTCAATTGCTAGACAGGACACCATTCAGAAGTTTGTTCAGAGCTTTTTATGAACAGCAAGTAATAGAATCTGCTTGTAGGAAGTCTGATATTGACATCGTTGCTGTTTTAAAATGTTTTGTCATGGGAAAAAATGCTTTCACATTTGGGGAAATCAGTGGTACCATATCAGCAGGCAACATTGCAGATATATTTGGTTTGAATGTTGAAGGCCGTGAGATCAACCTGAACCAAAAGAAAAGGAAGGGGGATTCAGAGTTCATTAAAAGACAATTTCCTGGTGATAAAAGGTTGTCAAAGGTGATTTTGGAGAAAAAAATCAAAGATGTTGCAAAACTAAGGGGGCTGGAGAATGAAAGTGATTTTGTTCGGTTGGTTTGTCTATACTTTTGTGTAACACTGTTTTTCTGCAATAGTGGTAATGACCTCAGTTGGTTTATAGTTCCTTACATAGAGGATTTAGAATCAATGTCTCTCTATGCATGGGCACCTGCAGTTAAGAATTACTTGGATACCTCGCTTAGAGGTATGAATGGTCGGCCAGAAAATGCTTGTGGGTGTCTGATTGCCCTGTTGACGCAGTCCCCAAGTGCAGTTGAAATACCTAACAAAGAGAAGTATGGGCTAGAAACTACCAGTAGTGAAGAAGAGGGCTCTAAAGAGAAGGGTAAAGATGACATTGACACTAGTAAGATGTTCCAATTGTTACCAAGTCAGGACTACCTAGATGATATTGAACCAGGGCCTTCAAGCAATGACGCGATGGACAAAAGGCTTGATGAGTTGACCGCTTTGCTAAAAAATGAACAAGCTCGTAACGAGATTCTTTGTAATGAAAATAAGAGATTGGAGTCAGAGATTGAGATGCTTCGTCGGTCCAAAAATTTGGTTGAGGTTGAGAAGCAGACTTCGAGGACCTTGAGGTCGAGGTCAGAGTGTAAAAAACCCTCCTTTCTGGTGGACTATATTACTGACAATTCCAGAAAAGGGAAAGGGAAATTTCAAGTTGTGAACAATGATGACGACGACGACTTCGTCCAATCGAGCCCCAAGAAGAAGAAGGCTATAGATTTATATGTGGAAATCTTAAGTCAGCGACAACCTAAGGATGGTGAACCGATATGTCTTTTTTTGCCCACCTTTAATTGGGACAATGGTGGAGACATCACCACAGGACTGGTTGAAGCTCACTGTGAGACATTCTTTGATAATGTCTGGAAGAAAGACTTCGTGTTTCTCCCAGTTATGCACAAGAAACATCAGCACTACACCTTGTTAGTCCTAAACAAAGAACTTGAATGTTGGGAACATTATAACCACGCAATCCCCAACGCATTCTACATCAGTGGACCATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

487

Amino Acids

55.84

Weight (kDa)

5.65

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1413
AarI CACCTGC 1 cut(s) 598
AasI GACNNNNNNGTC 2 cut(s) 1021, 1133
Acc36I ACCTGC 1 cut(s) 598
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 260, 586
AccII CGCG 1 cut(s) 860
AciI CCGC 1 cut(s) 888
AcoI YGGCCR 1 cut(s) 638
AcsI RAATTY 2 cut(s) 982, 1097
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 14, 262
AfiI CCNNNNNNNGG 3 cut(s) 1086, 1208, 1245
AflII CTTAAG 1 cut(s) 1186
AgsI TTSAA 9 cut(s) 104, 301, 308, 698, 836, 849, 1103, 1283, 1397
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 2 cut(s) 376, 838
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 4 cut(s) 100, 143, 911, 1286
AluI AGCT 4 cut(s) 100, 143, 911, 1286
Alw26I GTCTC 3 cut(s) 576, 1254, 1289
AoxI GGCC 3 cut(s) 310, 638, 842
ApoI RAATTY 2 cut(s) 982, 1097
ArsI GACNNNNNNTTYG 3 cut(s) 1115, 1147, 1440
Asp700I GAANNNNTTC 1 cut(s) 1325
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 4 cut(s) 842, 975, 1014, 1448
AsuHPI GGTGA 5 cut(s) 16, 392, 412, 1223, 1258
AvaII GGWCC 3 cut(s) 975, 1014, 1448
AxyI CCTNAGG 1 cut(s) 1203
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 260, 586
BanII GRGCYC 2 cut(s) 755, 1148
BccI CCATC 2 cut(s) 856, 1202
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 2 cut(s) 378, 840
BciVI GTATCC 1 cut(s) 604
BcoDI GTCTC 3 cut(s) 576, 1254, 1289
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 4 cut(s) 110, 725, 786, 824
BfmI CTRYAG 2 cut(s) 591, 1164
BfrI CTTAAG 1 cut(s) 1186
BfuAI ACCTGC 1 cut(s) 598
BfuI GTATCC 1 cut(s) 604
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 378, 840
Bme18I GGWCC 3 cut(s) 975, 1014, 1448
BmgT120I GGNCC 4 cut(s) 842, 975, 1014, 1448
BmiI GGNNCC 2 cut(s) 262, 588
BmrFI CCNGG 2 cut(s) 378, 840
BmrI ACTGGG 1 cut(s) 1334
BmsI GCATC 1 cut(s) 954
BmuI ACTGGG 1 cut(s) 1334
BpmI CTGGAG 1 cut(s) 467
BpuEI CTTGAG 3 cut(s) 29, 44, 1039
BsaJI CCNNGG 1 cut(s) 839
Bsc4I CCNNNNNNNGG 3 cut(s) 1086, 1208, 1245
Bse1I ACTGG 3 cut(s) 735, 1281, 1340
Bse21I CCTNAGG 1 cut(s) 1203
Bse3DI GCAATG 2 cut(s) 279, 859
BseBI CCWGG 2 cut(s) 378, 840
BseDI CCNNGG 1 cut(s) 839
BseGI GGATG 1 cut(s) 1213
BseLI CCNNNNNNNGG 3 cut(s) 1086, 1208, 1245
BseMI GCAATG 2 cut(s) 279, 859
BseMII CTCAG 1 cut(s) 541
BseNI ACTGG 3 cut(s) 735, 1281, 1340
BseSI GKGCMC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 1 cut(s) 860
BshFI GGCC 3 cut(s) 312, 640, 844
BshNI GGYRCC 2 cut(s) 260, 586
BslFI GGGAC 2 cut(s) 667, 1262
BslI CCNNNNNNNGG 3 cut(s) 1086, 1208, 1245
BsmAI GTCTC 3 cut(s) 576, 1254, 1289
BsmFI GGGAC 2 cut(s) 667, 1262
BsmI GAATGC 1 cut(s) 1433
BsnI GGCC 3 cut(s) 312, 640, 844
Bsp1286I GDGCHC 3 cut(s) 589, 755, 1148
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 888
BspANI GGCC 3 cut(s) 312, 640, 844
BspCNI CTCAG 1 cut(s) 540
BspFNI CGCG 1 cut(s) 860
BspLI GGNNCC 2 cut(s) 262, 588
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 598
BspT107I GGYRCC 2 cut(s) 260, 586
BspTI CTTAAG 1 cut(s) 1186
BsrDI GCAATG 2 cut(s) 279, 859
BsrI ACTGG 3 cut(s) 735, 1281, 1340
BssECI CCNNGG 1 cut(s) 839
BssMI GATC 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 378, 840
Bst4CI ACNGT 3 cut(s) 67, 501, 1292
Bst6I CTCTTC 1 cut(s) 741
BstAFI CTTAAG 1 cut(s) 1186
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 4 cut(s) 437, 527, 620, 1203
BstF5I GGATG 1 cut(s) 1213
BstFNI CGCG 1 cut(s) 860
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 3 cut(s) 576, 1254, 1289
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 378, 840
BstSCI CCNGG 2 cut(s) 376, 838
BstSFI CTRYAG 2 cut(s) 591, 1164
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 860
BstXI CCANNNNNNTGG 2 cut(s) 985, 1276
Bsu36I CCTNAGG 1 cut(s) 1203
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 3 cut(s) 312, 640, 844
BtgZI GCGATG 1 cut(s) 875
BtsCI GGATG 1 cut(s) 1213
BtsIMutI CAGTG 4 cut(s) 262, 497, 1288, 1450
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 274
Cfr13I GGNCC 4 cut(s) 842, 975, 1014, 1448
CseI GACGC 2 cut(s) 685, 866
Csp6I GTAC 2 cut(s) 13, 261
CviAII CATG 2 cut(s) 223, 582
CviQI GTAC 2 cut(s) 13, 261
DdeI CTNAG 4 cut(s) 437, 527, 620, 1203
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
DraI TTTAAA 1 cut(s) 210
DrdI GACNNNNNNGTC 2 cut(s) 1021, 1133
DseDI GACNNNNNNGTC 2 cut(s) 1021, 1133
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
Eco24I GRGCYC 2 cut(s) 755, 1148
Eco47I GGWCC 3 cut(s) 975, 1014, 1448
Eco57I CTGAAG 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 1203
EcoO109I RGGNCCY 2 cut(s) 842, 1014
EcoRII CCWGG 2 cut(s) 376, 838
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 2 cut(s) 755, 1148
FaeI CATG 2 cut(s) 226, 585
FalI AAGNNNNNCTT 4 cut(s) 590, 622, 1310, 1342
FaqI GGGAC 2 cut(s) 667, 1262
FatI CATG 2 cut(s) 222, 581
FokI GGATG 1 cut(s) 1220
FriOI GRGCYC 2 cut(s) 755, 1148
FspBI CTAG 4 cut(s) 110, 725, 786, 824
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 3 cut(s) 312, 640, 844
HgaI GACGC 2 cut(s) 685, 866
Hin1II CATG 2 cut(s) 226, 585
HincII GTYRAC 2 cut(s) 675, 885
HindII GTYRAC 2 cut(s) 675, 885
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 167, 350, 563, 922, 950
HphI GGTGA 5 cut(s) 16, 392, 412, 1223, 1258
Hpy166II GTNNAC 6 cut(s) 675, 885, 1060, 1111, 1214, 1448
Hpy188I TCNGA 7 cut(s) 128, 140, 187, 355, 663, 955, 1033
Hpy188III TCNNGA 3 cut(s) 815, 1080, 1315
Hpy8I GTNNAC 6 cut(s) 675, 885, 1060, 1111, 1214, 1448
Hpy99I CGWCG 3 cut(s) 975, 1127, 1130
HpyAV CCTTC 6 cut(s) 50, 302, 337, 757, 855, 1153
HpyCH4III ACNGT 3 cut(s) 67, 501, 1292
HpyCH4V TGCA 7 cut(s) 284, 431, 510, 581, 593, 692, 1348
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 4 cut(s) 437, 527, 620, 1203
Hsp92II CATG 2 cut(s) 226, 585
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 318
LweI GCATC 1 cut(s) 954
MaeI CTAG 4 cut(s) 110, 725, 786, 824
MaeIII GTNAC 4 cut(s) 85, 493, 804, 914
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 5 cut(s) 755, 758, 1165, 1168, 1330
MfeI CAATTG 2 cut(s) 104, 800
MhlI GDGCHC 3 cut(s) 589, 755, 1148
MluCI AATT 8 cut(s) 104, 371, 601, 800, 982, 1075, 1097, 1243
MlyI GAGTC 1 cut(s) 959
Mph1103I ATGCAT 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 1325
MseI TTAA 5 cut(s) 209, 363, 597, 1187, 1242
MspCI CTTAAG 1 cut(s) 1186
MspR9I CCNGG 2 cut(s) 378, 840
MunI CAATTG 2 cut(s) 104, 800
Mva1269I GAATGC 1 cut(s) 1433
MvaI CCWGG 2 cut(s) 378, 840
MvnI CGCG 1 cut(s) 860
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 1 cut(s) 318
NlaIII CATG 2 cut(s) 226, 585
NlaIV GGNNCC 2 cut(s) 262, 588
NsiI ATGCAT 1 cut(s) 583
PaqCI CACCTGC 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 1131
PctI GAATGC 1 cut(s) 1433
PdmI GAANNNNTTC 1 cut(s) 1325
PfeI GAWTC 4 cut(s) 167, 350, 563, 922
PflFI GACNNNGTC 2 cut(s) 679, 1133
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
PpuMI RGGWCCY 1 cut(s) 1014
PsiI TTATAA 1 cut(s) 1413
Psp5II RGGWCCY 1 cut(s) 1014
Psp6I CCWGG 2 cut(s) 376, 838
PspGI CCWGG 2 cut(s) 376, 838
PspN4I GGNNCC 2 cut(s) 262, 588
PspPI GGNCC 4 cut(s) 842, 975, 1014, 1448
PspPPI RGGWCCY 1 cut(s) 1014
PstI CTGCAG 1 cut(s) 595
PsyI GACNNNGTC 2 cut(s) 679, 1133
RsaI GTAC 2 cut(s) 14, 262
RsaNI GTAC 2 cut(s) 13, 261
SaqAI TTAA 5 cut(s) 209, 363, 597, 1187, 1242
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 4 cut(s) 842, 975, 1014, 1448
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 1 cut(s) 959
ScrFI CCNGG 2 cut(s) 378, 840
SduI GDGCHC 3 cut(s) 589, 755, 1148
SfaNI GCATC 1 cut(s) 954
SfcI CTRYAG 2 cut(s) 591, 1164
SinI GGWCC 3 cut(s) 975, 1014, 1448
SmlI CTYRAG 4 cut(s) 23, 44, 1018, 1186
SmoI CTYRAG 4 cut(s) 23, 44, 1018, 1186
SpeI ACTAGT 1 cut(s) 785
Sse9I AATT 8 cut(s) 104, 371, 601, 800, 982, 1075, 1097, 1243
SsiI CCGC 1 cut(s) 888
SspMI CTAG 4 cut(s) 110, 725, 786, 824
StyD4I CCNGG 2 cut(s) 376, 838
TaaI ACNGT 3 cut(s) 67, 501, 1292
TaqI TCGA 3 cut(s) 1010, 1025, 1142
TaqII GACCGA 1 cut(s) 963
TasI AATT 8 cut(s) 104, 371, 601, 800, 982, 1075, 1097, 1243
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 4 cut(s) 167, 350, 563, 922
Tru1I TTAA 5 cut(s) 209, 363, 597, 1187, 1242
Tru9I TTAA 5 cut(s) 209, 363, 597, 1187, 1242
TscAI CASTG 4 cut(s) 262, 504, 1295, 1450
TspDTI ATGAA 6 cut(s) 165, 349, 468, 644, 918, 948
TspRI CASTG 4 cut(s) 262, 504, 1295, 1450
Tth111I GACNNNGTC 2 cut(s) 679, 1133
Vha464I CTTAAG 1 cut(s) 1186
VpaK11BI GGWCC 3 cut(s) 975, 1014, 1448
XapI RAATTY 2 cut(s) 982, 1097
XmnI GAANNNNTTC 1 cut(s) 1325
XspI CTAG 4 cut(s) 110, 725, 786, 824
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.