Rmu_sc0004605.1_g000010

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004605.1
OG0000441
Physical Location & Seq
Forward (+)
44082 .. 53756
9675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004605.1_g000010.1.cds

Sequence Viewer

Length: 2028 bp
atggcaaagaaggagtatccctatctagagtacaggtgtgatttattgaagtttggacgtgtgatgacggatgagcttagagcagacataacacaagagaaactagttttgatccagagaaccccatttgggagcttgtttatggcgtattacaatggtacattaatagaatctgcttgcaaaaaatctgatttggaaatagtggctctcttgaagtgttttaaccagcaaaacaaaagttttaatttcggggagttcaccggtactataaccagcaaagacatctctgagttgtttggattaacactcattggggaagaaattaacctagatcagaagaagaagaaagaggatgacgggttcaggacaagacaactgggcggagtcccgaggatgagcaaggcaatattagaacaaaaaataaaacatgtagctaagttgagagggattgaggatgaaaaagattttgtaaggcttgtctgtctctacttttgcgttacattattcctctgcaatagtggtaatgaactcggttggaatgtcctcccatatatagaggatattgaaacaatgtcgcagtatgcatgggcacctttagtgtgtgatcatttaattgaatcgattatgaagatgaatggtcgtcctgaaactgcatgtgggtgtgtaattgctctgccgttttggttttgtgagcggactctattcattgaaccgatgagaggaagggaagtaatggaaccaaaaattgtgaaatggaatttgccggaactttacgctaggatgaaagtggcctctattcttgagatagaggtgaaggagagagatgaggatcagagtacaaatgttatgcctagtggtgagaagcagttatttgaaattgggactacaagcggtacaaaatcaagagaacaaaaaaatgcgactgattttgatcccaacaagatgttccagctgttaccgacccaattctacttggaagaaagccaagagggaccttcaagcaatgaggaagatgtacctgaattggagaaaagggttcaagagtttgctgatttgcttgaggttgagcgagccaaaaatgagactcttagtgcggaaaatttgaaactatgcatggagataggattgctcaggcaagccattcctaaagacgagattccaaatgtgaattcaaggaagttgaggacaaaagaacaatgcaaaaaaccatcattccttgaaggttatatcattggcgacattagagccaaaagaggtaaggaaaagatcattgatgaaataggtgatgctgttgtggaagaaccagctgtgaagaaggggaagaaacagactgttgcgcaacaaataattgtgagaaggttaagggttggaaagtttatgtcccaggtaaatgcagaaaagctcaaggaatatttgtccaaagctagcaggtattccggctgcattattggcttgatgaaaggtcggttgctcttcagctttcttttcctcctccctgatcgcaggtccagctttcggcgagcatcaccacctctcctaatcacttttggcgtgcccgccgctccaagcaagtgttggccattccaccatccatccatcatccccgtcatgccagcaagcatcaccacctctcctgcgtggccaaaaactggagctgcgatcagggaggaggaaaagaaggccgaagagcagagaggaggaagagaaagaagagacgacgatcttatggagaagaacaactacgatacggttacggtggagcctcaccaacttgacctcggacctgaacaagcgctcactgacgcaatgggactggcgatcttcatagatcatgaccttattgggtcttctggtggcgacttcctttttcgcgtggtggcaatggtacatacactacagactgtggaggcgacatcagatccaggcgacgactctgctttgaagatggaggttggtctatactgggcctatcctgttgggcccgggtgctattgcccttgggccatatgggctgtttgtttactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

675

Amino Acids

76.63

Weight (kDa)

5.76

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1338
Acc36I ACCTGC 2 cut(s) 1419, 1494
AccB1I GGYRCC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 1649
AccBSI CCGCTC 2 cut(s) 694, 1562
AccII CGCG 1 cut(s) 1872
AciI CCGC 6 cut(s) 381, 694, 891, 1094, 1557, 1560
AclWI GGATC 4 cut(s) 106, 837, 926, 1913
AcoI YGGCCR 2 cut(s) 1577, 1640
AcsI RAATTY 3 cut(s) 757, 1099, 1168
AcuI CTGAAG 1 cut(s) 1459
AfaI GTAC 7 cut(s) 32, 160, 265, 838, 895, 1017, 1887
AfeI AGCGCT 1 cut(s) 1794
AfiI CCNNNNNNNGG 4 cut(s) 129, 719, 1515, 1649
AflIII ACRYGT 2 cut(s) 58, 427
AgeI ACCGGT 1 cut(s) 260
AhlI ACTAGT 1 cut(s) 103
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 2 cut(s) 1383, 1921
AjuI GAANNNNNNNTTGG 4 cut(s) 929, 961, 1153, 1185
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
Alw26I GTCTC 3 cut(s) 488, 1076, 1707
AlwI GGATC 4 cut(s) 106, 837, 926, 1913
Ama87I CYCGRG 2 cut(s) 388, 1982
Aor51HI AGCGCT 1 cut(s) 1794
AoxI GGCC 7 cut(s) 789, 1577, 1640, 1680, 1965, 1979, 2001
ApaI GGGCCC 1 cut(s) 1983
ApeKI GCWGC 2 cut(s) 1440, 1655
ApoI RAATTY 3 cut(s) 757, 1099, 1168
AseI ATTAAT 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 260
AspLEI GCGC 2 cut(s) 1339, 1795
AspS9I GGNCC 7 cut(s) 992, 1506, 1781, 1965, 1979, 1980, 2001
AsuC2I CCSGG 2 cut(s) 1983, 1984
AsuHPI GGTGA 7 cut(s) 250, 823, 869, 1295, 1518, 1615, 1757
AsuNHI GCTAGC 1 cut(s) 1424
AvaI CYCGRG 2 cut(s) 388, 1982
AvaII GGWCC 3 cut(s) 992, 1506, 1781
BaeGI GKGCMC 3 cut(s) 592, 1557, 1983
BalI TGGCCA 2 cut(s) 1579, 1642
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 1983
BarI GAAGNNNNNNTAC 2 cut(s) 1724, 1756
BbsI GAAGAC 1 cut(s) 1839
BbvI GCAGC 2 cut(s) 1427, 1642
BccI CCATC 5 cut(s) 1216, 1596, 1600, 1604, 1939
BceAI ACGGC 1 cut(s) 661
BcgI CGANNNNNNTGC 2 cut(s) 1916, 1950
BciT130I CCWGG 2 cut(s) 1385, 1923
BciVI GTATCC 1 cut(s) 27
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 2 cut(s) 1983, 1984
BcoDI GTCTC 3 cut(s) 488, 1076, 1707
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 6 cut(s) 26, 104, 329, 777, 852, 1425
BfmI CTRYAG 1 cut(s) 1895
BfoI RGCGCY 1 cut(s) 1796
BfuAI ACCTGC 2 cut(s) 1419, 1494
BfuI GTATCC 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 2009
BisI GCNGC 3 cut(s) 1441, 1560, 1656
BlsI GCNGC 3 cut(s) 1442, 1561, 1657
Bme1390I CCNGG 4 cut(s) 1385, 1923, 1983, 1984
Bme18I GGWCC 3 cut(s) 992, 1506, 1781
BmeT110I CYCGRG 2 cut(s) 388, 1982
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 7 cut(s) 992, 1506, 1781, 1965, 1979, 1980, 2001
BmiI GGNNCC 5 cut(s) 591, 738, 993, 1761, 1981
BmrFI CCNGG 4 cut(s) 1385, 1923, 1983, 1984
BmrI ACTGGG 2 cut(s) 386, 1972
BmsI GCATC 3 cut(s) 1276, 1532, 1629
BmtI GCTAGC 1 cut(s) 1428
BmuI ACTGGG 2 cut(s) 386, 1972
BpiI GAAGAC 1 cut(s) 1839
BpmI CTGGAG 1 cut(s) 1671
Bpu10I CCTNAGC 1 cut(s) 1130
BpuEI CTTGAG 3 cut(s) 821, 1079, 1388
BpuMI CCSGG 2 cut(s) 1983, 1984
Bsa29I ATCGAT 1 cut(s) 620
BsaBI GATNNNNATC 2 cut(s) 828, 930
BsaJI CCNNGG 5 cut(s) 389, 1383, 1777, 1982, 1997
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 1518, 1548, 1615, 1645
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 719, 1515, 1649
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 4 cut(s) 381, 1654, 1818, 1967
Bse3DI GCAATG 3 cut(s) 1009, 1812, 1887
Bse8I GATNNNNATC 2 cut(s) 828, 930
BseBI CCWGG 2 cut(s) 1385, 1923
BseCI ATCGAT 1 cut(s) 620
BseDI CCNNGG 5 cut(s) 389, 1383, 1777, 1982, 1997
BseGI GGATG 8 cut(s) 76, 358, 399, 460, 786, 1588, 1592, 1599
BseJI GATNNNNATC 2 cut(s) 828, 930
BseLI CCNNNNNNNGG 4 cut(s) 129, 719, 1515, 1649
BseMI GCAATG 3 cut(s) 1009, 1812, 1887
BseMII CTCAG 2 cut(s) 279, 1144
BseNI ACTGG 4 cut(s) 381, 1654, 1818, 1967
BseRI GAGGAG 3 cut(s) 1481, 1682, 1710
BseSI GKGCMC 3 cut(s) 592, 1557, 1983
BseXI GCAGC 2 cut(s) 1427, 1642
Bsh1236I CGCG 1 cut(s) 1872
BshFI GGCC 7 cut(s) 791, 1579, 1642, 1682, 1967, 1981, 2003
BshNI GGYRCC 1 cut(s) 589
BshTI ACCGGT 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 620
BsiHKCI CYCGRG 2 cut(s) 388, 1982
BsiSI CCGG 4 cut(s) 261, 764, 1437, 1983
BslFI GGGAC 5 cut(s) 371, 895, 1005, 1366, 1824
BslI CCNNNNNNNGG 4 cut(s) 129, 719, 1515, 1649
BsmAI GTCTC 3 cut(s) 488, 1076, 1707
BsmBI CGTCTC 1 cut(s) 1707
BsmFI GGGAC 5 cut(s) 371, 895, 1005, 1366, 1824
BsnI GGCC 7 cut(s) 791, 1579, 1642, 1682, 1967, 1981, 2003
BsoBI CYCGRG 2 cut(s) 388, 1982
Bsp120I GGGCCC 1 cut(s) 1979
Bsp1286I GDGCHC 3 cut(s) 592, 1557, 1983
BspACI CCGC 6 cut(s) 381, 694, 891, 1094, 1557, 1560
BspANI GGCC 7 cut(s) 791, 1579, 1642, 1682, 1967, 1981, 2003
BspCNI CTCAG 2 cut(s) 280, 1143
BspDI ATCGAT 1 cut(s) 620
BspFNI CGCG 1 cut(s) 1872
BspHI TCATGA 1 cut(s) 1831
BspLI GGNNCC 5 cut(s) 591, 738, 993, 1761, 1981
BspMI ACCTGC 2 cut(s) 1419, 1494
BspOI GCTAGC 1 cut(s) 1428
BspPI GGATC 4 cut(s) 106, 837, 926, 1913
BspQI GCTCTTC 2 cut(s) 1478, 1680
BspT107I GGYRCC 1 cut(s) 589
BsrBI CCGCTC 2 cut(s) 694, 1562
BsrDI GCAATG 3 cut(s) 1009, 1812, 1887
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 4 cut(s) 381, 1654, 1818, 1967
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 5 cut(s) 389, 1383, 1777, 1982, 1997
BssT1I CCWWGG 1 cut(s) 1997
Bst2UI CCWGG 2 cut(s) 1385, 1923
Bst4CI ACNGT 4 cut(s) 1333, 1750, 1756, 1903
Bst6I CTCTTC 4 cut(s) 1478, 1680, 1696, 1705
BstC8I GCNNGC 9 cut(s) 178, 1071, 1137, 1426, 1521, 1553, 1557, 1614, 1618
BstDEI CTNAG 5 cut(s) 77, 288, 435, 1088, 1130
BstF5I GGATG 8 cut(s) 76, 358, 399, 460, 786, 1588, 1592, 1599
BstFNI CGCG 1 cut(s) 1872
BstH2I RGCGCY 1 cut(s) 1796
BstHHI GCGC 2 cut(s) 1339, 1795
BstMAI GTCTC 3 cut(s) 488, 1076, 1707
BstMWI GCNNNNNNNGC 3 cut(s) 1449, 1509, 2009
BstNI CCWGG 2 cut(s) 1385, 1923
BstNSI RCATGY 2 cut(s) 431, 657
BstSCI CCNGG 4 cut(s) 1383, 1921, 1981, 1982
BstSFI CTRYAG 1 cut(s) 1895
BstSLI GKGCMC 3 cut(s) 592, 1557, 1983
BstUI CGCG 1 cut(s) 1872
BstV1I GCAGC 2 cut(s) 1427, 1642
BstV2I GAAGAC 1 cut(s) 1839
BstX2I RGATCY 1 cut(s) 1918
BstYI RGATCY 1 cut(s) 1918
Bsu15I ATCGAT 1 cut(s) 620
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 7 cut(s) 791, 1579, 1642, 1682, 1967, 1981, 2003
BsuTUI ATCGAT 1 cut(s) 620
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 8 cut(s) 76, 358, 399, 460, 786, 1588, 1592, 1599
BtsIMutI CAGTG 1 cut(s) 1797
BveI ACCTGC 2 cut(s) 1419, 1494
Cac8I GCNNGC 9 cut(s) 178, 1071, 1137, 1426, 1521, 1553, 1557, 1614, 1618
CciI TCATGA 1 cut(s) 1831
CfoI GCGC 2 cut(s) 1339, 1795
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 7 cut(s) 992, 1506, 1781, 1965, 1979, 1980, 2001
Cfr9I CCCGGG 1 cut(s) 1982
ClaI ATCGAT 1 cut(s) 620
CseI GACGC 1 cut(s) 1811
Csp6I GTAC 7 cut(s) 31, 159, 264, 837, 894, 1016, 1886
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 6 cut(s) 428, 585, 654, 1114, 1609, 1832
CviQI GTAC 7 cut(s) 31, 159, 264, 837, 894, 1016, 1886
DdeI CTNAG 5 cut(s) 77, 288, 435, 1088, 1130
EaeI YGGCCR 2 cut(s) 1577, 1640
Eam1104I CTCTTC 4 cut(s) 1478, 1680, 1696, 1705
EarI CTCTTC 4 cut(s) 1478, 1680, 1696, 1705
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 1997
Eco24I GRGCYC 1 cut(s) 1983
Eco47I GGWCC 3 cut(s) 992, 1506, 1781
Eco47III AGCGCT 1 cut(s) 1794
Eco57I CTGAAG 1 cut(s) 1459
Eco88I CYCGRG 2 cut(s) 388, 1982
EcoO109I RGGNCCY 1 cut(s) 992
EcoRI GAATTC 1 cut(s) 1168
EcoRII CCWGG 2 cut(s) 1383, 1921
EcoT14I CCWWGG 1 cut(s) 1997
EcoT22I ATGCAT 2 cut(s) 586, 1115
EcoT38I GRGCYC 1 cut(s) 1983
ErhI CCWWGG 1 cut(s) 1997
Esp3I CGTCTC 1 cut(s) 1707
FaeI CATG 6 cut(s) 431, 588, 657, 1117, 1612, 1835
FaqI GGGAC 5 cut(s) 371, 895, 1005, 1366, 1824
FatI CATG 6 cut(s) 427, 584, 653, 1113, 1608, 1831
FauI CCCGC 1 cut(s) 1564
FauNDI CATATG 1 cut(s) 2006
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 1441, 1560, 1656
FokI GGATG 8 cut(s) 83, 365, 406, 467, 793, 1575, 1579, 1586
FriOI GRGCYC 1 cut(s) 1983
Fsp4HI GCNGC 3 cut(s) 1441, 1560, 1656
FspBI CTAG 6 cut(s) 26, 104, 329, 777, 852, 1425
FspI TGCGCA 1 cut(s) 1338
GlaI GCGC 2 cut(s) 1338, 1794
GluI GCNGC 3 cut(s) 1441, 1560, 1656
GsuI CTGGAG 1 cut(s) 1671
HaeII RGCGCY 1 cut(s) 1796
HaeIII GGCC 7 cut(s) 791, 1579, 1642, 1682, 1967, 1981, 2003
HapII CCGG 4 cut(s) 261, 764, 1437, 1983
HgaI GACGC 1 cut(s) 1811
HhaI GCGC 2 cut(s) 1339, 1795
Hin1II CATG 6 cut(s) 431, 588, 657, 1117, 1612, 1835
Hin6I GCGC 2 cut(s) 1337, 1793
HinP1I GCGC 2 cut(s) 1337, 1793
HinfI GANTC 7 cut(s) 170, 384, 617, 697, 1084, 1156, 1931
HpaII CCGG 4 cut(s) 261, 764, 1437, 1983
HphI GGTGA 7 cut(s) 250, 823, 869, 1295, 1518, 1615, 1757
Hpy166II GTNNAC 2 cut(s) 258, 2021
Hpy188I TCNGA 6 cut(s) 190, 289, 336, 834, 1781, 1918
Hpy8I GTNNAC 2 cut(s) 258, 2021
Hpy99I CGWCG 2 cut(s) 1721, 1931
HpyAV CCTTC 8 cut(s) 4, 717, 808, 1005, 1214, 1309, 1350, 1672
HpyCH4III ACNGT 4 cut(s) 1333, 1750, 1756, 1903
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 8 cut(s) 180, 513, 584, 653, 1113, 1200, 1394, 1443
HpyF10VI GCNNNNNNNGC 3 cut(s) 1449, 1509, 2009
HpyF3I CTNAG 5 cut(s) 77, 288, 435, 1088, 1130
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 6 cut(s) 431, 588, 657, 1117, 1612, 1835
HspAI GCGC 2 cut(s) 1337, 1793
Ksp22I TGATCA 1 cut(s) 604
LguI GCTCTTC 2 cut(s) 1478, 1680
LmnI GCTCC 4 cut(s) 132, 1567, 1652, 1759
Lsp1109I GCAGC 2 cut(s) 1427, 1642
LweI GCATC 3 cut(s) 1276, 1532, 1629
MaeI CTAG 6 cut(s) 26, 104, 329, 777, 852, 1425
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 496, 954, 1750
MbiI CCGCTC 2 cut(s) 694, 1562
MflI RGATCY 1 cut(s) 1918
MhlI GDGCHC 3 cut(s) 592, 1557, 1983
MlsI TGGCCA 2 cut(s) 1579, 1642
MluNI TGGCCA 2 cut(s) 1579, 1642
MlyI GAGTC 4 cut(s) 393, 691, 1078, 1925
MmeI TCCRAC 2 cut(s) 515, 1348
Mox20I TGGCCA 2 cut(s) 1579, 1642
Mph1103I ATGCAT 2 cut(s) 586, 1115
MscI TGGCCA 2 cut(s) 1579, 1642
MseI TTAA 8 cut(s) 164, 222, 243, 302, 324, 611, 1361, 2026
MslI CAYNNNNRTG 1 cut(s) 658
Msp20I TGGCCA 2 cut(s) 1579, 1642
MspA1I CMGCKG 2 cut(s) 952, 1307
MspI CCGG 4 cut(s) 261, 764, 1437, 1983
MspR9I CCNGG 4 cut(s) 1385, 1923, 1983, 1984
MvaI CCWGG 2 cut(s) 1385, 1923
MvnI CGCG 1 cut(s) 1872
MwoI GCNNNNNNNGC 3 cut(s) 1449, 1509, 2009
NciI CCSGG 2 cut(s) 1983, 1984
NdeI CATATG 1 cut(s) 2006
NheI GCTAGC 1 cut(s) 1424
NlaIII CATG 6 cut(s) 431, 588, 657, 1117, 1612, 1835
NlaIV GGNNCC 5 cut(s) 591, 738, 993, 1761, 1981
NsbI TGCGCA 1 cut(s) 1338
NsiI ATGCAT 2 cut(s) 586, 1115
NspI RCATGY 2 cut(s) 431, 657
PagI TCATGA 1 cut(s) 1831
PciI ACATGT 1 cut(s) 427
PciSI GCTCTTC 2 cut(s) 1478, 1680
PfeI GAWTC 3 cut(s) 170, 617, 1156
PflMI CCANNNNNTGG 1 cut(s) 1649
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 3 cut(s) 1442, 1561, 1657
PleI GAGTC 4 cut(s) 392, 691, 1078, 1925
PpsI GAGTC 4 cut(s) 392, 691, 1078, 1925
PpuMI RGGWCCY 1 cut(s) 992
PscI ACATGT 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 992
Psp6I CCWGG 2 cut(s) 1383, 1921
PspGI CCWGG 2 cut(s) 1383, 1921
PspN4I GGNNCC 5 cut(s) 591, 738, 993, 1761, 1981
PspOMI GGGCCC 1 cut(s) 1979
PspPI GGNCC 7 cut(s) 992, 1506, 1781, 1965, 1979, 1980, 2001
PspPPI RGGWCCY 1 cut(s) 992
PsuI RGATCY 1 cut(s) 1918
PvuII CAGCTG 2 cut(s) 952, 1307
RsaI GTAC 7 cut(s) 32, 160, 265, 838, 895, 1017, 1887
RsaNI GTAC 7 cut(s) 31, 159, 264, 837, 894, 1016, 1886
RseI CAYNNNNRTG 1 cut(s) 658
SapI GCTCTTC 2 cut(s) 1478, 1680
SaqAI TTAA 8 cut(s) 164, 222, 243, 302, 324, 611, 1361, 2026
SatI GCNGC 3 cut(s) 1441, 1560, 1656
Sau96I GGNCC 7 cut(s) 992, 1506, 1781, 1965, 1979, 1980, 2001
SchI GAGTC 4 cut(s) 393, 691, 1078, 1925
ScrFI CCNGG 4 cut(s) 1385, 1923, 1983, 1984
SduI GDGCHC 3 cut(s) 592, 1557, 1983
SfaNI GCATC 3 cut(s) 1276, 1532, 1629
SfcI CTRYAG 1 cut(s) 1895
SinI GGWCC 3 cut(s) 992, 1506, 1781
SmaI CCCGGG 1 cut(s) 1984
SmiMI CAYNNNNRTG 1 cut(s) 658
SmlI CTYRAG 3 cut(s) 800, 1058, 1403
SmoI CTYRAG 3 cut(s) 800, 1058, 1403
SpeI ACTAGT 1 cut(s) 103
SsiI CCGC 6 cut(s) 381, 694, 891, 1094, 1557, 1560
SspI AATATT 2 cut(s) 408, 1412
SspMI CTAG 6 cut(s) 26, 104, 329, 777, 852, 1425
StyD4I CCNGG 4 cut(s) 1383, 1921, 1981, 1982
StyI CCWWGG 1 cut(s) 1997
TaaI ACNGT 4 cut(s) 1333, 1750, 1756, 1903
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 620
TatI WGTACW 2 cut(s) 30, 836
TauI GCSGC 1 cut(s) 1562
TfiI GAWTC 3 cut(s) 170, 617, 1156
Tru1I TTAA 8 cut(s) 164, 222, 243, 302, 324, 611, 1361, 2026
Tru9I TTAA 8 cut(s) 164, 222, 243, 302, 324, 611, 1361, 2026
TscAI CASTG 1 cut(s) 1804
TseI GCWGC 2 cut(s) 1440, 1655
TspDTI ATGAA 9 cut(s) 471, 540, 641, 647, 694, 797, 1290, 1472, 1813
TspGWI ACGGA 1 cut(s) 83
TspMI CCCGGG 1 cut(s) 1982
TspRI CASTG 1 cut(s) 1804
Van91I CCANNNNNTGG 1 cut(s) 1649
VpaK11BI GGWCC 3 cut(s) 992, 1506, 1781
VspI ATTAAT 1 cut(s) 164
XapI RAATTY 3 cut(s) 757, 1099, 1168
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 2 cut(s) 431, 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 1572
XmaI CCCGGG 1 cut(s) 1982
XspI CTAG 6 cut(s) 26, 104, 329, 777, 852, 1425
Zsp2I ATGCAT 2 cut(s) 586, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.