Rmu_sc0000611.1_g000017

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000611.1
OG0000441
Physical Location & Seq
Reverse (-)
60475 .. 61630
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000611.1_g000017.1.cds

Sequence Viewer

Length: 930 bp
atggctaaagagtacacccacctggaatttagttgctaccttctcaagtttggatgtgttatgtccgacaagttaagggtagaaattactgaagtgaagcttgatctgatagagtccacaccgttcagggatttgtctagagctttttatgagcggcaaataatagactctgtttgtaggaagtctgatagtgacatcgtatctcttttaaaatgctttgacaaggaaaaaaactcgtttcagtttggggaaattactggtaccatatatgtaggtgacattgcagaactgtttggtttgaatattgaaggccgtgagatcaaccttagccaaaagaagagaaaaagggattctgatttcattacaagacgattccctagagtgaaaaggttgtccaaggtgatcctggagcaacaaatcaaagatgtatctaaactgagggggcttgagaatgaatgtgattttgttaggttggtttgtctctatttttgtgtaacactatttttctgcaatagtggcaatgaccttagctggtttatagtaccgtacatagaggacctagattcaatgtctctctatgcctgggcacccgcagtgaagaattacttggacaactcccttttgagtatgaatggtcggcctgaaagcccttgtggttgtctcattgccctgttggtgaggtttatttcctttaattttgtgtctgatcttgatcaattcattgaaccaattaaaggacgggatgaactgaagccaaaattcttgaaatggaatttactagagttgtatgcaaggatgaaggttgcggatatacatgaaatcaaggaaagtgatcaacaacaatcccttggtgaacttaaaacacgtagcattgagaagagtgtgctagctattacctgtactgaagaagggggctctaaagagaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

309

Amino Acids

35.74

Weight (kDa)

5.72

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 260, 586
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 3 cut(s) 154, 591, 806
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 3 cut(s) 26, 758, 772
AcuI CTGAAG 3 cut(s) 111, 770, 924
AfaI GTAC 5 cut(s) 14, 262, 543, 548, 901
AfiI CCNNNNNNNGG 1 cut(s) 734
AflIII ACRYGT 1 cut(s) 863
AgsI TTSAA 5 cut(s) 301, 308, 567, 725, 766
AjnI CCWGG 3 cut(s) 21, 405, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AluBI AGCT 4 cut(s) 100, 143, 531, 890
AluI AGCT 4 cut(s) 100, 143, 531, 890
Alw26I GTCTC 3 cut(s) 485, 576, 665
AlwI GGATC 1 cut(s) 397
AoxI GGCC 2 cut(s) 310, 638
ApoI RAATTY 3 cut(s) 26, 758, 772
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 4 cut(s) 287, 412, 688, 863
AsuNHI GCTAGC 1 cut(s) 886
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 260, 586
BanII GRGCYC 1 cut(s) 917
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 23, 407, 583
BclI TGATCA 2 cut(s) 712, 832
BcoDI GTCTC 3 cut(s) 485, 576, 665
BfaI CTAG 5 cut(s) 138, 378, 560, 779, 887
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 3 cut(s) 23, 407, 583
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 262, 588
BmrFI CCNGG 3 cut(s) 23, 407, 583
BmtI GCTAGC 1 cut(s) 890
BpmI CTGGAG 1 cut(s) 428
Bpu10I CCTNAGC 2 cut(s) 326, 527
BpuEI CTTGAG 2 cut(s) 29, 467
BsaAI YACGTR 1 cut(s) 866
BsaBI GATNNNNATC 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 396, 582, 847
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 3 cut(s) 279, 526, 663
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 3 cut(s) 23, 407, 583
BseDI CCNNGG 3 cut(s) 396, 582, 847
BseGI GGATG 3 cut(s) 59, 748, 801
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMI GCAATG 3 cut(s) 279, 526, 663
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 589
BshFI GGCC 2 cut(s) 312, 640
BshNI GGYRCC 2 cut(s) 260, 586
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 3 cut(s) 485, 576, 665
BsnI GGCC 2 cut(s) 312, 640
Bsp1286I GDGCHC 2 cut(s) 589, 917
Bsp143I GATC 6 cut(s) 103, 318, 402, 706, 712, 832
BspACI CCGC 3 cut(s) 154, 591, 806
BspANI GGCC 2 cut(s) 312, 640
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 262, 588
BspOI GCTAGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 2 cut(s) 260, 586
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 3 cut(s) 279, 526, 663
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 396, 582, 847
BssMI GATC 6 cut(s) 103, 318, 402, 706, 712, 832
BssT1I CCWWGG 2 cut(s) 396, 847
Bst2UI CCWGG 3 cut(s) 23, 407, 583
Bst4CI ACNGT 3 cut(s) 123, 291, 546
Bst6I CTCTTC 2 cut(s) 332, 872
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 1 cut(s) 888
BstDEI CTNAG 3 cut(s) 326, 437, 527
BstF5I GGATG 3 cut(s) 59, 748, 801
BstKTI GATC 6 cut(s) 106, 321, 405, 709, 715, 835
BstMAI GTCTC 3 cut(s) 485, 576, 665
BstMBI GATC 6 cut(s) 103, 318, 402, 706, 712, 832
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNI CCWGG 3 cut(s) 23, 407, 583
BstSCI CCNGG 3 cut(s) 21, 405, 581
BstSLI GKGCMC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 312, 640
BtsCI GGATG 3 cut(s) 59, 748, 801
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 1 cut(s) 888
Cfr13I GGNCC 1 cut(s) 556
Csp6I GTAC 5 cut(s) 13, 261, 542, 547, 900
CviAII CATG 1 cut(s) 815
CviQI GTAC 5 cut(s) 13, 261, 542, 547, 900
DdeI CTNAG 3 cut(s) 326, 437, 527
DpnI GATC 6 cut(s) 105, 320, 404, 708, 714, 834
DpnII GATC 6 cut(s) 103, 318, 402, 706, 712, 832
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 332, 872
EarI CTCTTC 2 cut(s) 332, 872
Eco130I CCWWGG 2 cut(s) 396, 847
Eco24I GRGCYC 1 cut(s) 917
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 3 cut(s) 111, 770, 924
EcoO109I RGGNCCY 1 cut(s) 556
EcoRII CCWGG 3 cut(s) 21, 405, 581
EcoT14I CCWWGG 2 cut(s) 396, 847
EcoT38I GRGCYC 1 cut(s) 917
ErhI CCWWGG 2 cut(s) 396, 847
FaeI CATG 1 cut(s) 818
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 590, 622
FatI CATG 1 cut(s) 814
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 2 cut(s) 712, 832
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 3 cut(s) 66, 755, 808
FriOI GRGCYC 1 cut(s) 917
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 5 cut(s) 138, 378, 560, 779, 887
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 2 cut(s) 312, 640
Hin1II CATG 1 cut(s) 818
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 113, 167, 350, 372, 563
HphI GGTGA 4 cut(s) 287, 412, 688, 863
Hpy166II GTNNAC 3 cut(s) 15, 117, 854
Hpy188I TCNGA 5 cut(s) 67, 108, 187, 355, 706
Hpy188III TCNNGA 3 cut(s) 138, 710, 763
Hpy8I GTNNAC 3 cut(s) 15, 117, 854
HpyAV CCTTC 4 cut(s) 50, 302, 793, 902
HpyCH4III ACNGT 3 cut(s) 123, 291, 546
HpyCH4IV ACGT 1 cut(s) 865
HpyCH4V TGCA 3 cut(s) 284, 510, 791
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 3 cut(s) 326, 437, 527
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 1 cut(s) 818
KpnI GGTACC 1 cut(s) 264
Ksp22I TGATCA 2 cut(s) 712, 832
Kzo9I GATC 6 cut(s) 103, 318, 402, 706, 712, 832
LmnI GCTCC 1 cut(s) 409
MaeI CTAG 5 cut(s) 138, 378, 560, 779, 887
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 3 cut(s) 191, 275, 493
MalI GATC 6 cut(s) 105, 320, 404, 708, 714, 834
MbiI CCGCTC 1 cut(s) 154
MboI GATC 6 cut(s) 103, 318, 402, 706, 712, 832
MboII GAAGA 4 cut(s) 349, 610, 889, 917
MhlI GDGCHC 2 cut(s) 589, 917
MlyI GAGTC 2 cut(s) 122, 161
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 3 cut(s) 432, 547, 672
MseI TTAA 5 cut(s) 74, 209, 693, 732, 858
MspR9I CCNGG 3 cut(s) 23, 407, 583
MvaI CCWGG 3 cut(s) 23, 407, 583
MwoI GCNNNNNNNGC 1 cut(s) 516
NdeII GATC 6 cut(s) 103, 318, 402, 706, 712, 832
NheI GCTAGC 1 cut(s) 886
NlaIII CATG 1 cut(s) 818
NlaIV GGNNCC 2 cut(s) 262, 588
NmuCI GTSAC 2 cut(s) 191, 275
PfeI GAWTC 3 cut(s) 350, 372, 563
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 2 cut(s) 121, 161
PpsI GAGTC 2 cut(s) 121, 161
Ppu21I YACGTR 1 cut(s) 866
PpuMI RGGWCCY 1 cut(s) 556
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 3 cut(s) 21, 405, 581
PspGI CCWGG 3 cut(s) 21, 405, 581
PspN4I GGNNCC 2 cut(s) 262, 588
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
RsaI GTAC 5 cut(s) 14, 262, 543, 548, 901
RsaNI GTAC 5 cut(s) 13, 261, 542, 547, 900
SaqAI TTAA 5 cut(s) 74, 209, 693, 732, 858
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 6 cut(s) 103, 318, 402, 706, 712, 832
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 2 cut(s) 122, 161
ScrFI CCNGG 3 cut(s) 23, 407, 583
SduI GDGCHC 2 cut(s) 589, 917
SinI GGWCC 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 44, 446
SmoI CTYRAG 2 cut(s) 44, 446
SsiI CCGC 3 cut(s) 154, 591, 806
SspI AATATT 1 cut(s) 304
SspMI CTAG 5 cut(s) 138, 378, 560, 779, 887
StyD4I CCNGG 3 cut(s) 21, 405, 581
StyI CCWWGG 2 cut(s) 396, 847
TaaI ACNGT 3 cut(s) 123, 291, 546
TaiI ACGT 1 cut(s) 868
TatI WGTACW 2 cut(s) 12, 899
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 350, 372, 563
Tru1I TTAA 5 cut(s) 74, 209, 693, 732, 858
Tru9I TTAA 5 cut(s) 74, 209, 693, 732, 858
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 2 cut(s) 191, 275
Tsp45I GTSAC 2 cut(s) 191, 275
TspDTI ATGAA 7 cut(s) 349, 468, 644, 709, 759, 812, 831
TspRI CASTG 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 3 cut(s) 26, 758, 772
XbaI TCTAGA 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 5 cut(s) 138, 378, 560, 779, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.