Rmu_sc0002806.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002806.1
OG0000441
Physical Location & Seq
Forward (+)
94719 .. 95939
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002806.1_g000024.1.cds

Sequence Viewer

Length: 786 bp
atgtatccatgtaggtcgcccctgtggcatggagtgaagtcaggagtatttgtcaaggatgtactagccatcttgaatgaggaagctgtcggtgtgcaggctatggatgcatatcttgaaatcttaagttacaagactccagagcagggacaccctgaatctctgtttatgtccacgtttgattgggatgatataaaaggagaagacacaacagcaggagttgaagcttactgtgaacctttgttcaataatgtctgcaatatggacttcgtttttctcccaattatacataagaaacagcagcaattcaccttcttagtcctaaacaaagaattgcaacgctgggaacactacaatactcaaagaccaaagcaaactacattaatggacccctgctttgaagatgcatccagattgcatggtgaaatctcaaaacgcttggcatttttgaaagataagggtaaatcaattattaagagcaagatgatatggaaacatgtgaaaagagaagggcaagtgtgtctatttactttcactgtatcaaacaaagacagggacttgcttacctggttgggaaagaataatgttgatcaattccctattatttcaagcaaggaatgtcctaaacaagatccttccagtgtggacagctggattgctgtgacgtacattatcaagcgattatcggaaggtcttgaattagagtctacctttaaaaaaggtgccatgactcagcagagagcacatgttttgggaaggtttttaaatgacaacaatgacagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

30.08

Weight (kDa)

6.66

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 722
AccI GTMKAC 1 cut(s) 707
AclWI GGATC 1 cut(s) 626
AfaI GTAC 2 cut(s) 63, 668
AfiI CCNNNNNNNGG 1 cut(s) 146
AflII CTTAAG 1 cut(s) 124
AflIII ACRYGT 2 cut(s) 496, 745
AgsI TTSAA 8 cut(s) 76, 119, 224, 247, 401, 451, 609, 698
AjnI CCWGG 1 cut(s) 566
AluBI AGCT 3 cut(s) 86, 227, 651
AluI AGCT 3 cut(s) 86, 227, 651
Alw21I GWGCWC 1 cut(s) 745
AlwI GGATC 1 cut(s) 626
ApeKI GCWGC 1 cut(s) 301
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AseI ATTAAT 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 301, 434
AvaII GGWCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 568
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 589
BfaI CTAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 124
BfuI GTATCC 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 568
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 390, 724
BmrFI CCNGG 1 cut(s) 568
BmsI GCATC 3 cut(s) 97, 394, 416
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 639
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 1 cut(s) 568
BseGI GGATG 4 cut(s) 64, 112, 193, 407
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 1 cut(s) 639
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 745
BslFI GGGAC 2 cut(s) 162, 569
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 162, 569
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 2 cut(s) 589, 631
BspCNI CTCAG 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 390, 724
BspPI GGATC 1 cut(s) 626
BspT107I GGYRCC 1 cut(s) 722
BspTI CTTAAG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 639
BssMI GATC 2 cut(s) 589, 631
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 3 cut(s) 233, 538, 782
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 316, 732
BstF5I GGATG 4 cut(s) 64, 112, 193, 407
BstKTI GATC 2 cut(s) 592, 634
BstMBI GATC 2 cut(s) 589, 631
BstMWI GCNNNNNNNGC 2 cut(s) 25, 107
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 2 cut(s) 500, 749
BstSCI CCNGG 1 cut(s) 566
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuI GTATCC 1 cut(s) 15
BtsCI GGATG 4 cut(s) 64, 112, 193, 407
BtsIMutI CAGTG 2 cut(s) 534, 646
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 388
CsiI ACCWGGT 1 cut(s) 566
Csp6I GTAC 2 cut(s) 62, 667
CviAII CATG 6 cut(s) 9, 29, 419, 497, 727, 746
CviJI RGCY 5 cut(s) 68, 86, 101, 227, 651
CviKI_1 RGCY 5 cut(s) 68, 86, 101, 227, 651
CviQI GTAC 2 cut(s) 62, 667
DdeI CTNAG 2 cut(s) 316, 732
DpnI GATC 2 cut(s) 591, 633
DpnII GATC 2 cut(s) 589, 631
DraI TTTAAA 2 cut(s) 715, 765
Eco47I GGWCC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 566
EcoT22I ATGCAT 2 cut(s) 112, 409
FaeI CATG 6 cut(s) 12, 32, 422, 500, 730, 749
FaqI GGGAC 2 cut(s) 162, 569
FatI CATG 6 cut(s) 8, 28, 418, 496, 726, 745
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 4 cut(s) 71, 119, 200, 394
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 302
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 123
Hin1II CATG 6 cut(s) 12, 32, 422, 500, 730, 749
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 4 cut(s) 136, 158, 704, 730
HphI GGTGA 2 cut(s) 301, 434
Hpy166II GTNNAC 4 cut(s) 174, 236, 646, 708
Hpy188I TCNGA 1 cut(s) 688
Hpy188III TCNNGA 6 cut(s) 42, 73, 116, 140, 411, 695
Hpy8I GTNNAC 4 cut(s) 174, 236, 646, 708
HpyAV CCTTC 5 cut(s) 322, 503, 645, 683, 750
HpyCH4III ACNGT 3 cut(s) 233, 538, 782
HpyCH4IV ACGT 2 cut(s) 176, 665
HpyCH4V TGCA 6 cut(s) 97, 110, 258, 337, 407, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 107
HpyF3I CTNAG 2 cut(s) 316, 732
HpySE526I ACGT 2 cut(s) 176, 665
Hsp92II CATG 6 cut(s) 12, 32, 422, 500, 730, 749
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 2 cut(s) 589, 631
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 97, 394, 416
MabI ACCWGGT 1 cut(s) 566
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 176, 665
MaeIII GTNAC 2 cut(s) 128, 661
MalI GATC 2 cut(s) 591, 633
MboI GATC 2 cut(s) 589, 631
MboII GAAGA 2 cut(s) 215, 413
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 6 cut(s) 282, 305, 332, 468, 593, 698
MlyI GAGTC 3 cut(s) 130, 713, 724
MnlI CCTC 1 cut(s) 73
Mph1103I ATGCAT 2 cut(s) 112, 409
MseI TTAA 5 cut(s) 125, 383, 474, 714, 764
MspA1I CMGCKG 1 cut(s) 651
MspCI CTTAAG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 568
MvaI CCWGG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 25, 107
NdeII GATC 2 cut(s) 589, 631
NlaIII CATG 6 cut(s) 12, 32, 422, 500, 730, 749
NlaIV GGNNCC 2 cut(s) 390, 724
NmuCI GTSAC 1 cut(s) 661
NsiI ATGCAT 2 cut(s) 112, 409
NspI RCATGY 2 cut(s) 500, 749
PciI ACATGT 2 cut(s) 496, 745
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 3 cut(s) 130, 712, 724
PpsI GAGTC 3 cut(s) 130, 712, 724
PscI ACATGT 2 cut(s) 496, 745
PshBI ATTAAT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 390, 724
PspPI GGNCC 1 cut(s) 388
PsuI RGATCY 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 651
RsaI GTAC 2 cut(s) 63, 668
RsaNI GTAC 2 cut(s) 62, 667
SaqAI TTAA 5 cut(s) 125, 383, 474, 714, 764
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 589, 631
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 3 cut(s) 130, 713, 724
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 1 cut(s) 745
SexAI ACCWGGT 1 cut(s) 566
SfaNI GCATC 3 cut(s) 97, 394, 416
SinI GGWCC 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 6 cut(s) 282, 305, 332, 468, 593, 698
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 566
TaaI ACNGT 3 cut(s) 233, 538, 782
TaiI ACGT 2 cut(s) 179, 668
TasI AATT 6 cut(s) 282, 305, 332, 468, 593, 698
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 5 cut(s) 125, 383, 474, 714, 764
Tru9I TTAA 5 cut(s) 125, 383, 474, 714, 764
TscAI CASTG 2 cut(s) 541, 646
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 661
TspRI CASTG 2 cut(s) 541, 646
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 388
VspI ATTAAT 1 cut(s) 383
XceI RCATGY 2 cut(s) 500, 749
XmiI GTMKAC 1 cut(s) 707
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 2 cut(s) 112, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.