RLG00000019935

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000441
Physical Location & Seq
Reverse (-)
58814628 .. 58819935
5308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019935

Sequence Viewer

Length: 480 bp
ATGAAGCGTCGAGTTGTGGTGTTCTATGTAGATGAAGCTCCTACAGTTTCTTCACCACCCCAGGTTAATGAAGGCACTCCCTCTTCAGTGTCTAAAAGTGATGGGGGTACTGCATCTCCATCTTCATCTCCTGTGAAAAATACGAATAAGACTCAAGAGGTGAAGGCCTTGGAGCACTCTGCCCCAACTAATCATGATGATGCCCATATTGCAATAGAGACTTTTGTTGAAAGTATTTTGGAGGAAGCCGCTGGAAATATCATGGAAACAATTGCGCAGAGAGTTATGGAGGAGGATGAACTTGTCTTAGAATCTAATGAGCATGATGTCTCTGAGGCTTTAGATAATGATTCTCATGTTAGTGATACGCCATCCCGGACTTGGGGTGACATTTTTGATGAAGAACGGGATGGAGGTCCAGGTGCCGAGACCAAATACAAACAACAACAACAAAATATATTTCTTCCAATTGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.38

Weight (kDa)

4.39

Isoelectric Point (pI)

71.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 422
AciI CCGC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 381, 382
AgsI TTSAA 2 cut(s) 230, 473
AjnI CCWGG 2 cut(s) 60, 418
AluBI AGCT 2 cut(s) 38, 477
AluI AGCT 2 cut(s) 38, 477
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 3 cut(s) 212, 334, 422
AoxI GGCC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 45, 172, 398
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 4 cut(s) 95, 127, 379, 404
BciT130I CCWGG 2 cut(s) 62, 420
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 212, 334, 422
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 3 cut(s) 62, 376, 420
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 3 cut(s) 62, 376, 420
BmsI GCATC 2 cut(s) 122, 190
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 60, 168
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 382
BseBI CCWGG 2 cut(s) 62, 420
BseDI CCNNGG 2 cut(s) 60, 168
BseGI GGATG 3 cut(s) 301, 371, 415
BseLI CCNNNNNNNGG 2 cut(s) 381, 382
BseMII CTCAG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 305
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 381, 382
BsmAI GTCTC 3 cut(s) 212, 334, 422
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 325
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 60, 168
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 62, 420
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 307, 333
BstF5I GGATG 3 cut(s) 301, 371, 415
BstHHI GCGC 1 cut(s) 277
BstMAI GTCTC 3 cut(s) 212, 334, 422
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 2 cut(s) 62, 420
BstSCI CCNGG 3 cut(s) 60, 374, 418
BstSFI CTRYAG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 3 cut(s) 301, 371, 415
BtsIMutI CAGTG 1 cut(s) 93
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 108
CviAII CATG 4 cut(s) 194, 262, 323, 356
CviJI RGCY 5 cut(s) 38, 167, 248, 338, 477
CviKI_1 RGCY 5 cut(s) 38, 167, 248, 338, 477
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 307, 333
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 60, 418
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 197, 265, 326, 359
FaiI YATR 8 cut(s) 27, 195, 207, 263, 287, 324, 357, 458
FatI CATG 4 cut(s) 193, 261, 322, 355
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 3 cut(s) 308, 358, 422
Fsp4HI GCNGC 1 cut(s) 249
FspI TGCGCA 1 cut(s) 276
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 376
HhaI GCGC 1 cut(s) 277
Hin1II CATG 4 cut(s) 197, 265, 326, 359
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 3 cut(s) 151, 311, 350
HpaII CCGG 1 cut(s) 376
HphI GGTGA 3 cut(s) 45, 172, 398
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 155, 194
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 65, 157
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 113, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 307, 333
Hsp92II CATG 4 cut(s) 197, 265, 326, 359
HspAI GCGC 1 cut(s) 275
LmnI GCTCC 2 cut(s) 43, 172
LpnPI CCDG 7 cut(s) 47, 74, 144, 237, 389, 405, 432
LweI GCATC 2 cut(s) 122, 190
MaeIII GTNAC 1 cut(s) 386
MboII GAAGA 5 cut(s) 42, 75, 114, 413, 455
MfeI CAATTG 2 cut(s) 270, 468
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 270, 468
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 7 cut(s) 91, 151, 235, 283, 286, 328, 407
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 198, 360
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 3 cut(s) 62, 376, 420
MunI CAATTG 2 cut(s) 270, 468
MvaI CCWGG 2 cut(s) 62, 420
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 376
NlaIII CATG 4 cut(s) 197, 265, 326, 359
NlaIV GGNNCC 1 cut(s) 424
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 386
NsbI TGCGCA 1 cut(s) 276
PagI TCATGA 1 cut(s) 193
PceI AGGCCT 1 cut(s) 167
PfeI GAWTC 2 cut(s) 311, 350
PfoI TCCNGGA 1 cut(s) 374
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 60, 418
PspGI CCWGG 2 cut(s) 60, 418
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 1 cut(s) 416
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 2 cut(s) 198, 360
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 3 cut(s) 62, 376, 420
SduI GDGCHC 1 cut(s) 177
SetI ASST 6 cut(s) 40, 66, 162, 418, 424, 479
SfaNI GCATC 2 cut(s) 122, 190
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 198, 360
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 2 cut(s) 270, 468
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 60, 374, 418
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 270, 468
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 311, 350
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 6 cut(s) 17, 48, 84, 114, 312, 414
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.