Rh7BG472400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000441
Physical Location & Seq
Reverse (-)
55692192 .. 55693265
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG472400.1

Sequence Viewer

Length: 609 bp
ATGACCGACGAGTTAAGGGCAGATATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTCAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTCCTTGTGACATTCCAAAACTGTTTGGTTTGAATATTGAAGGTCGTGAGATCAACATTAACCAGAAGAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGCATGGTGAAATCTCAAAACGCTTGGCATTTTTGAAAGATAAGGGTAAATCAATTATTAAGAGCAAGATGATATGGAAACATGTGAAAAGAGAAGGGCAAGTGAGTCTATTTACGTTCAATGTATCAAACAAAGACAGGGACTTGCTTACCTGGTTGGGAAGGAATAATGTTCATCATTTCCCTATTATTTCAAGCAAGGAATGTCCTAAACAAGATCCTTCCAGTGTGGACAACGGGATTGCTGTGACGTACATTATCAAGCGATTATCGGAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATGTTTTGGGAAGGTTCTTAAGTGACAACAATGACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.29

Weight (kDa)

9.72

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 530
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 491
AflII CTTAAG 1 cut(s) 586
AflIII ACRYGT 2 cut(s) 319, 568
AgsI TTSAA 6 cut(s) 142, 149, 274, 358, 432, 521
AjnI CCWGG 2 cut(s) 217, 389
AluBI AGCT 2 cut(s) 40, 83
AluI AGCT 2 cut(s) 40, 83
Alw21I GWGCWC 1 cut(s) 568
AlwI GGATC 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 568
BciT130I CCWGG 2 cut(s) 219, 391
BfrI CTTAAG 1 cut(s) 586
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 219, 391
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 2 cut(s) 219, 391
BpmI CTGGAG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 219, 391
BseDI CCNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 1 cut(s) 462
BshNI GGYRCC 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 568
BslFI GGGAC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 3 cut(s) 43, 159, 454
BspACI CCGC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 547
BspPI GGATC 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 545
BspTI CTTAAG 1 cut(s) 586
BsrBI CCGCTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 3 cut(s) 43, 159, 454
Bst2UI CCWGG 2 cut(s) 219, 391
Bst4CI ACNGT 3 cut(s) 63, 132, 605
Bst6I CTCTTC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 586
BstDEI CTNAG 1 cut(s) 555
BstKTI GATC 3 cut(s) 46, 162, 457
BstMBI GATC 3 cut(s) 43, 159, 454
BstNI CCWGG 2 cut(s) 219, 391
BstNSI RCATGY 2 cut(s) 323, 572
BstSCI CCNGG 2 cut(s) 217, 389
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 469
CsiI ACCWGGT 1 cut(s) 389
Csp6I GTAC 1 cut(s) 490
CviAII CATG 4 cut(s) 242, 320, 550, 569
CviJI RGCY 2 cut(s) 40, 83
CviKI_1 RGCY 2 cut(s) 40, 83
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 1 cut(s) 555
DpnI GATC 3 cut(s) 45, 161, 456
DpnII GATC 3 cut(s) 43, 159, 454
DraI TTTAAA 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 217, 389
FaeI CATG 4 cut(s) 245, 323, 553, 572
FaiI YATR 6 cut(s) 90, 243, 313, 321, 551, 570
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 392
FatI CATG 4 cut(s) 241, 319, 549, 568
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 240
Hin1II CATG 4 cut(s) 245, 323, 553, 572
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 7 cut(s) 53, 107, 191, 213, 343, 527, 553
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 57, 469, 531
Hpy188I TCNGA 3 cut(s) 48, 196, 511
Hpy188III TCNNGA 2 cut(s) 155, 518
Hpy8I GTNNAC 3 cut(s) 57, 469, 531
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 6 cut(s) 143, 326, 393, 468, 506, 573
HpyCH4III ACNGT 3 cut(s) 63, 132, 605
HpyCH4IV ACGT 2 cut(s) 353, 488
HpyF3I CTNAG 1 cut(s) 555
HpySE526I ACGT 2 cut(s) 353, 488
Hsp92II CATG 4 cut(s) 245, 323, 553, 572
Kzo9I GATC 3 cut(s) 43, 159, 454
LpnPI CCDG 8 cut(s) 52, 185, 204, 231, 361, 376, 403, 475
MabI ACCWGGT 1 cut(s) 389
MaeII ACGT 2 cut(s) 353, 488
MaeIII GTNAC 3 cut(s) 116, 484, 590
MalI GATC 3 cut(s) 45, 161, 456
MbiI CCGCTC 1 cut(s) 94
MboI GATC 3 cut(s) 43, 159, 454
MboII GAAGA 2 cut(s) 187, 190
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 2 cut(s) 291, 521
MlyI GAGTC 5 cut(s) 62, 101, 352, 536, 547
MseI TTAA 6 cut(s) 14, 168, 204, 297, 537, 587
MspCI CTTAAG 1 cut(s) 586
MspR9I CCNGG 2 cut(s) 219, 391
MvaI CCWGG 2 cut(s) 219, 391
NdeII GATC 3 cut(s) 43, 159, 454
NlaIII CATG 4 cut(s) 245, 323, 553, 572
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 3 cut(s) 116, 484, 590
NspI RCATGY 2 cut(s) 323, 572
PciI ACATGT 2 cut(s) 319, 568
PfeI GAWTC 2 cut(s) 191, 213
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 5 cut(s) 61, 101, 351, 535, 547
PpsI GAGTC 5 cut(s) 61, 101, 351, 535, 547
PscI ACATGT 2 cut(s) 319, 568
Psp6I CCWGG 2 cut(s) 217, 389
PspGI CCWGG 2 cut(s) 217, 389
PspN4I GGNNCC 1 cut(s) 547
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SaqAI TTAA 6 cut(s) 14, 168, 204, 297, 537, 587
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 43, 159, 454
SchI GAGTC 5 cut(s) 62, 101, 352, 536, 547
ScrFI CCNGG 2 cut(s) 219, 391
SduI GDGCHC 1 cut(s) 568
SexAI ACCWGGT 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 2 cut(s) 291, 521
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 145
StyD4I CCNGG 2 cut(s) 217, 389
TaaI ACNGT 3 cut(s) 63, 132, 605
TaiI ACGT 2 cut(s) 356, 491
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 291, 521
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 191, 213
Tru1I TTAA 6 cut(s) 14, 168, 204, 297, 537, 587
Tru9I TTAA 6 cut(s) 14, 168, 204, 297, 537, 587
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 3 cut(s) 116, 484, 590
Tsp45I GTSAC 3 cut(s) 116, 484, 590
TspDTI ATGAA 2 cut(s) 190, 401
TspRI CASTG 1 cut(s) 469
Vha464I CTTAAG 1 cut(s) 586
XceI RCATGY 2 cut(s) 323, 572
XmiI GTMKAC 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.