Rh5CG263300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
28101009 .. 28101587
579 bp
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UTR
Exon/CDS
Intron
Rh5CG263300.1

Sequence Viewer

Length: 396 bp
ATGAAAGGTGGAGAAACAAAAGCAGGAGTTGAAGCTTACTGTGAACCTTTGTTCAATAATGTCTGCAATATGGACTTCATTTTTCTCCCAATTATACATAAGAAACAGCAACAATTCACCTTGTTAGTCCTAAACAAAGAACTTCAACGCTGGGAACACTACAATACTCAAAGACCAAAGCAAACTACATTAGTGGACCCCTACTTTGAAGATGCATCCAGATTGCATGTTGAAATCTCAAAACACTTGGCATTTTTGAAAGATAAGGGTAAGTCAATAATTAAGAGCAAGATGATATGCATGGAAGCATGTGAAAAGAGAAGGGCAAGTGAAGCTATTTCCGTTCACGTTATCAAACAAAGACAGGGAGTTTCTTACCTGGTTGGGAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.2

Weight (kDa)

9.19

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 6 cut(s) 32, 55, 146, 209, 233, 259
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 2 cut(s) 35, 335
AluI AGCT 2 cut(s) 35, 335
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 2 cut(s) 202, 224
BseBI CCWGG 1 cut(s) 380
BseGI GGATG 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 41
BstF5I GGATG 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 230, 312
BstSCI CCNGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 378
CviAII CATG 3 cut(s) 227, 301, 309
CviJI RGCY 2 cut(s) 35, 335
CviKI_1 RGCY 2 cut(s) 35, 335
Eco47I GGWCC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 378
EcoT22I ATGCAT 2 cut(s) 217, 302
FaeI CATG 3 cut(s) 230, 304, 312
FaiI YATR 7 cut(s) 71, 95, 99, 228, 298, 302, 310
FatI CATG 3 cut(s) 226, 300, 308
FokI GGATG 1 cut(s) 202
GsaI CCCAGC 1 cut(s) 154
Hin1II CATG 3 cut(s) 230, 304, 312
HindIII AAGCTT 1 cut(s) 33
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 44, 196, 346
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 3 cut(s) 44, 196, 346
HpyAV CCTTC 2 cut(s) 315, 382
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 66, 215, 226, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 230, 304, 312
LpnPI CCDG 6 cut(s) 9, 136, 232, 350, 365, 392
LweI GCATC 2 cut(s) 202, 224
MabI ACCWGGT 1 cut(s) 378
MaeII ACGT 1 cut(s) 348
MboII GAAGA 1 cut(s) 221
MluCI AATT 3 cut(s) 90, 113, 279
Mph1103I ATGCAT 2 cut(s) 217, 302
MseI TTAA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 332
NlaIII CATG 3 cut(s) 230, 304, 312
NlaIV GGNNCC 1 cut(s) 198
NsiI ATGCAT 2 cut(s) 217, 302
NspI RCATGY 2 cut(s) 230, 312
Psp6I CCWGG 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 380
SetI ASST 7 cut(s) 10, 37, 49, 122, 337, 351, 381
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 2 cut(s) 202, 224
SinI GGWCC 1 cut(s) 196
Sse9I AATT 3 cut(s) 90, 113, 279
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 351
TasI AATT 3 cut(s) 90, 113, 279
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 17, 67
TspGWI ACGGA 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 196
XceI RCATGY 2 cut(s) 230, 312
Zsp2I ATGCAT 2 cut(s) 217, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.