Rh6CG257400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000441
Physical Location & Seq
Forward (+)
42921977 .. 42923458
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG257400.1

Sequence Viewer

Length: 1245 bp
ATGGCAAAGAAGGAGTATCCCTATCTAGAGTACAGGTGTGATTTATTGAAGTTTGGACGTGTGATGACGGATGAGCTTAGAGCAGACATAACACAAGAGAAACTAGTTTTGATCCAGAGAACACCATTTGGGAGCTTGTTTATGACGTATTACAATGGTACTTTAATAGAATCTGCTTGCAAAAAATCTGATTTGGAAATAGTGGCTCTCTTGAAGTGTTTTAACCAGCAAAATAAAAGTTTTAATTTTGGGGAGTTCACCGGTACTATAACCAGCAAAGACATCTCTGAGTTGTTTGGCTTAACACTCATTGGGGAAGAAATTAACCTAGATCAGAAGAAGAAGAAGAAGAAGAAAGAGGATGACGGGTTCAGGACAAGACAACTGGGCGGAGTCCCGAGGATGAGCAAGGCAATATTAGAACAAAAAATAAAACATGTAGCTAAGTTGAGAGGGATTGAGGATGAAAAAGATTTTGTAAGGCTTGTCTGTCTCTACTTTTGCGTTACATTATTCCTCTGCAATAGTGGTAATGAACTCGGTTGGAATGTCCTCCCATATATAGAGGATATTGAAACAATGTCGCAGTATGCATGGGCACCTTTAGTGTGTGATCATTTAATGGAATCGATTATGAAGATGAATGGTCGTCCTGAAACTGCATGTGGGTGTGTAATTGCTCTGCCGTTTTGGTTTTGTGAGCGGACTCTATTCAGTGAACCGATGAGAGGAAGGGAAGTAATGGAACCAAAAATTGTGAAATGGAATTTGCCGGAACTTTATGCTAGGATGAAAGTGGCCTCTATTCTTGAGATAGAGGTGAAGGAGAGAGATGAGGATCAGAGTACAAATGTTATGCCTAGTGGTGAGAAGCAGTTATTTGAAATTGGGACTACAAGCGGTACAAAATCAAGAGAACAAAAAAATGCGACTGATTTTGATCCCAACAAGATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGGAAGATGTACCTGAATTGGAGAAAAGGGTTCAAGAGTTTGCTGATTTGCTTGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTACAGGTACATATTCCCTGGCTTTTGCTATAGTTGACTCTGAAGATGAAAGTACCGCTGTCAGAGGTAAGGTCTGGGTACTTTCTTGTCTGAATTCATCGGGTGTACAGTTATGCCTCTGGTCTAGGTGTTTGGGTATCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

414

Amino Acids

47.45

Weight (kDa)

5.12

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 67 - 258 2.6e-11 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 703
AciI CCGC 4 cut(s) 390, 703, 900, 1155
AclWI GGATC 3 cut(s) 106, 846, 935
AcsI RAATTY 2 cut(s) 766, 1192
AcuI CTGAAG 1 cut(s) 1161
AfiI CCNNNNNNNGG 1 cut(s) 728
AflIII ACRYGT 2 cut(s) 58, 436
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 6 cut(s) 49, 214, 575, 884, 1008, 1049
AhlI ACTAGT 1 cut(s) 103
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 4 cut(s) 76, 135, 443, 961
AluI AGCT 4 cut(s) 76, 135, 443, 961
Alw26I GTCTC 2 cut(s) 497, 1085
AlwI GGATC 3 cut(s) 106, 846, 935
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 1 cut(s) 798
ApoI RAATTY 2 cut(s) 766, 1192
AsiGI ACCGGT 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 3 cut(s) 250, 832, 878
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 1001
BaeGI GKGCMC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 598
BceAI ACGGC 1 cut(s) 670
BciT130I CCWGG 1 cut(s) 1118
BciVI GTATCC 1 cut(s) 27
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 497, 1085
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 6 cut(s) 26, 104, 329, 786, 861, 1224
BfmI CTRYAG 1 cut(s) 1128
BfuI GTATCC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 1118
Bme18I GGWCC 1 cut(s) 1001
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 3 cut(s) 600, 747, 1002
BmrFI CCNGG 1 cut(s) 1118
BmrI ACTGGG 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 830, 1088
Bsa29I ATCGAT 1 cut(s) 629
BsaBI GATNNNNATC 2 cut(s) 837, 939
BsaJI CCNNGG 2 cut(s) 398, 1116
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 1018
Bse8I GATNNNNATC 2 cut(s) 837, 939
BseBI CCWGG 1 cut(s) 1118
BseCI ATCGAT 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 398, 1116
BseGI GGATG 5 cut(s) 76, 367, 408, 469, 795
BseJI GATNNNNATC 2 cut(s) 837, 939
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMI GCAATG 1 cut(s) 1018
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 601
BshFI GGCC 1 cut(s) 800
BshNI GGYRCC 1 cut(s) 598
BshTI ACCGGT 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 629
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 2 cut(s) 261, 773
BslFI GGGAC 3 cut(s) 380, 904, 1014
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 2 cut(s) 497, 1085
BsmFI GGGAC 3 cut(s) 380, 904, 1014
BsnI GGCC 1 cut(s) 800
BsoBI CYCGRG 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 1204
Bsp143I GATC 5 cut(s) 111, 331, 613, 838, 940
BspACI CCGC 4 cut(s) 390, 703, 900, 1155
BspANI GGCC 1 cut(s) 800
BspCNI CTCAG 1 cut(s) 280
BspDI ATCGAT 1 cut(s) 629
BspLI GGNNCC 3 cut(s) 600, 747, 1002
BspPI GGATC 3 cut(s) 106, 846, 935
BspT107I GGYRCC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 1018
BsrFI RCCGGY 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 1204
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 398, 1116
BssMI GATC 5 cut(s) 111, 331, 613, 838, 940
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 1 cut(s) 1209
BstAUI TGTACA 1 cut(s) 1204
BstC8I GCNNGC 2 cut(s) 178, 1080
BstDEI CTNAG 4 cut(s) 77, 288, 444, 1097
BstF5I GGATG 5 cut(s) 76, 367, 408, 469, 795
BstKTI GATC 5 cut(s) 114, 334, 616, 841, 943
BstMAI GTCTC 2 cut(s) 497, 1085
BstMBI GATC 5 cut(s) 111, 331, 613, 838, 940
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 2 cut(s) 440, 666
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 1 cut(s) 1128
BstSLI GKGCMC 1 cut(s) 601
Bsu15I ATCGAT 1 cut(s) 629
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 800
BsuTUI ATCGAT 1 cut(s) 629
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 5 cut(s) 76, 367, 408, 469, 795
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 2 cut(s) 178, 1080
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 1001
ClaI ATCGAT 1 cut(s) 629
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 3 cut(s) 437, 594, 663
DdeI CTNAG 4 cut(s) 77, 288, 444, 1097
DpnI GATC 5 cut(s) 113, 333, 615, 840, 942
DpnII GATC 5 cut(s) 111, 331, 613, 838, 940
EciI GGCGGA 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 1161
Eco88I CYCGRG 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 1192
EcoRII CCWGG 1 cut(s) 1116
EcoT22I ATGCAT 1 cut(s) 595
FaeI CATG 3 cut(s) 440, 597, 666
FaqI GGGAC 3 cut(s) 380, 904, 1014
FatI CATG 3 cut(s) 436, 593, 662
FbaI TGATCA 1 cut(s) 613
FokI GGATG 5 cut(s) 83, 374, 415, 476, 802
FspBI CTAG 6 cut(s) 26, 104, 329, 786, 861, 1224
HaeIII GGCC 1 cut(s) 800
HapII CCGG 2 cut(s) 261, 773
Hin1II CATG 3 cut(s) 440, 597, 666
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HinfI GANTC 6 cut(s) 170, 393, 626, 706, 1093, 1136
HpaII CCGG 2 cut(s) 261, 773
HphI GGTGA 3 cut(s) 250, 832, 878
Hpy166II GTNNAC 4 cut(s) 258, 719, 1135, 1205
Hpy188I TCNGA 7 cut(s) 190, 289, 336, 843, 1141, 1163, 1191
Hpy188III TCNNGA 9 cut(s) 26, 115, 211, 373, 397, 653, 809, 912, 1049
Hpy8I GTNNAC 4 cut(s) 258, 719, 1135, 1205
HpyAV CCTTC 4 cut(s) 4, 726, 817, 1014
HpyCH4III ACNGT 1 cut(s) 1209
HpyCH4IV ACGT 2 cut(s) 58, 146
HpyCH4V TGCA 4 cut(s) 180, 522, 593, 662
HpyF3I CTNAG 4 cut(s) 77, 288, 444, 1097
HpySE526I ACGT 2 cut(s) 58, 146
Hsp92II CATG 3 cut(s) 440, 597, 666
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 111, 331, 613, 838, 940
LmnI GCTCC 1 cut(s) 132
MaeI CTAG 6 cut(s) 26, 104, 329, 786, 861, 1224
MaeII ACGT 2 cut(s) 58, 146
MaeIII GTNAC 2 cut(s) 505, 963
MalI GATC 5 cut(s) 113, 333, 615, 840, 942
MbiI CCGCTC 1 cut(s) 703
MboI GATC 5 cut(s) 111, 331, 613, 838, 940
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 9 cut(s) 244, 321, 675, 753, 766, 885, 974, 1031, 1192
MlyI GAGTC 4 cut(s) 402, 700, 1087, 1130
MmeI TCCRAC 1 cut(s) 524
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 6 cut(s) 164, 222, 243, 302, 324, 620
MslI CAYNNNNRTG 1 cut(s) 667
MspA1I CMGCKG 2 cut(s) 961, 1157
MspI CCGG 2 cut(s) 261, 773
MspR9I CCNGG 1 cut(s) 1118
MvaI CCWGG 1 cut(s) 1118
NdeII GATC 5 cut(s) 111, 331, 613, 838, 940
NlaIII CATG 3 cut(s) 440, 597, 666
NlaIV GGNNCC 3 cut(s) 600, 747, 1002
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 2 cut(s) 440, 666
PciI ACATGT 1 cut(s) 436
PfeI GAWTC 2 cut(s) 170, 626
PinAI ACCGGT 1 cut(s) 260
PleI GAGTC 4 cut(s) 401, 700, 1087, 1130
PpsI GAGTC 4 cut(s) 401, 700, 1087, 1130
PpuMI RGGWCCY 1 cut(s) 1001
PscI ACATGT 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PspN4I GGNNCC 3 cut(s) 600, 747, 1002
PspPI GGNCC 1 cut(s) 1001
PspPPI RGGWCCY 1 cut(s) 1001
PvuII CAGCTG 1 cut(s) 961
RseI CAYNNNNRTG 1 cut(s) 667
SaqAI TTAA 6 cut(s) 164, 222, 243, 302, 324, 620
Sau3AI GATC 5 cut(s) 111, 331, 613, 838, 940
Sau96I GGNCC 1 cut(s) 1001
SchI GAGTC 4 cut(s) 402, 700, 1087, 1130
ScrFI CCNGG 1 cut(s) 1118
SduI GDGCHC 1 cut(s) 601
SfcI CTRYAG 1 cut(s) 1128
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 1 cut(s) 667
SmlI CTYRAG 2 cut(s) 809, 1067
SmoI CTYRAG 2 cut(s) 809, 1067
SpeI ACTAGT 1 cut(s) 103
Sse9I AATT 9 cut(s) 244, 321, 675, 753, 766, 885, 974, 1031, 1192
SsiI CCGC 4 cut(s) 390, 703, 900, 1155
SspI AATATT 1 cut(s) 417
SspMI CTAG 6 cut(s) 26, 104, 329, 786, 861, 1224
StyD4I CCNGG 1 cut(s) 1116
TaaI ACNGT 1 cut(s) 1209
TaiI ACGT 2 cut(s) 61, 149
TaqI TCGA 1 cut(s) 629
TasI AATT 9 cut(s) 244, 321, 675, 753, 766, 885, 974, 1031, 1192
TatI WGTACW 4 cut(s) 30, 845, 1100, 1204
TfiI GAWTC 2 cut(s) 170, 626
Tru1I TTAA 6 cut(s) 164, 222, 243, 302, 324, 620
Tru9I TTAA 6 cut(s) 164, 222, 243, 302, 324, 620
TscAI CASTG 1 cut(s) 721
TspDTI ATGAA 7 cut(s) 480, 549, 650, 656, 806, 1161, 1185
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 2 cut(s) 766, 1192
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 2 cut(s) 440, 666
XspI CTAG 6 cut(s) 26, 104, 329, 786, 861, 1224
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.