Rh2AG369300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000441
Physical Location & Seq
Forward (+)
54884069 .. 54884371
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG369300.1

Sequence Viewer

Length: 303 bp
ATGGCGTATTACAATGGTACATTAATAGAATCTGCTTGCAAAAAATCTGATTTGGAAATAGTGGCTCTCTTGAAGTGTTTTAACGAGCAAAACAAAAGTTTCATGTTTGGGGAGTTCACCGGTACTATAACCGGCAAAGACATCTCTGAGTTGTTTGGCTTAACACTCATTGGGGAAGAAATTAACCTAGACCAGAAGAAGAAGAAAGAGGATGTCGGGTTCAGGACAAGACAACTAGGTGGAGTTCCGAGGATGAGCAAGGCAATATTAGAACAAAAAATAAAACATGTAGCTAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

100

Amino Acids

11.25

Weight (kDa)

8.91

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 19, 124
AflIII ACRYGT 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 73
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AseI ATTAAT 1 cut(s) 23
AsiGI ACCGGT 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 109
BfaI CTAG 2 cut(s) 188, 236
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 119
Bse118I RCCGGY 2 cut(s) 119, 131
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 217, 258
BseMII CTCAG 1 cut(s) 138
BshTI ACCGGT 1 cut(s) 119
BsiSI CCGG 2 cut(s) 120, 132
BspCNI CTCAG 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 119, 131
BssAI RCCGGY 2 cut(s) 119, 131
BssECI CCNNGG 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 147, 294
BstF5I GGATG 2 cut(s) 217, 258
BstNSI RCATGY 1 cut(s) 290
BtsCI GGATG 2 cut(s) 217, 258
Cac8I GCNNGC 1 cut(s) 37
Cfr10I RCCGGY 2 cut(s) 119, 131
Csp6I GTAC 2 cut(s) 18, 123
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 2 cut(s) 103, 287
CviJI RGCY 3 cut(s) 65, 159, 293
CviKI_1 RGCY 3 cut(s) 65, 159, 293
CviQI GTAC 2 cut(s) 18, 123
DdeI CTNAG 2 cut(s) 147, 294
FaeI CATG 2 cut(s) 106, 290
FaiI YATR 3 cut(s) 104, 128, 288
FatI CATG 2 cut(s) 102, 286
FokI GGATG 2 cut(s) 224, 265
FspBI CTAG 2 cut(s) 188, 236
HapII CCGG 2 cut(s) 120, 132
Hin1II CATG 2 cut(s) 106, 290
HinfI GANTC 1 cut(s) 29
HpaII CCGG 2 cut(s) 120, 132
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 3 cut(s) 49, 148, 249
Hpy188III TCNNGA 2 cut(s) 70, 223
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 147, 294
Hsp92II CATG 2 cut(s) 106, 290
LpnPI CCDG 4 cut(s) 133, 145, 206, 208
MaeI CTAG 2 cut(s) 188, 236
MboII GAAGA 4 cut(s) 188, 208, 211, 214
MluCI AATT 1 cut(s) 180
MnlI CCTC 2 cut(s) 202, 243
MseI TTAA 4 cut(s) 23, 81, 161, 183
MspI CCGG 2 cut(s) 120, 132
NlaIII CATG 2 cut(s) 106, 290
NspI RCATGY 1 cut(s) 290
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 119
PscI ACATGT 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 23
RsaI GTAC 2 cut(s) 19, 124
RsaNI GTAC 2 cut(s) 18, 123
SaqAI TTAA 4 cut(s) 23, 81, 161, 183
SetI ASST 3 cut(s) 189, 241, 295
Sse9I AATT 1 cut(s) 180
SspI AATATT 1 cut(s) 267
SspMI CTAG 2 cut(s) 188, 236
TasI AATT 1 cut(s) 180
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 4 cut(s) 23, 81, 161, 183
Tru9I TTAA 4 cut(s) 23, 81, 161, 183
TspDTI ATGAA 1 cut(s) 91
VspI ATTAAT 1 cut(s) 23
XceI RCATGY 1 cut(s) 290
XspI CTAG 2 cut(s) 188, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.